RnoINT0096531 @ rn6
Intron Retention
Gene
ENSRNOG00000016983 | Myh7
Description
myosin heavy chain 7 [Source:RGD Symbol;Acc:62030]
Coordinates
chr15:33648214-33648867:-
Coord C1 exon
chr15:33648731-33648867
Coord A exon
chr15:33648470-33648730
Coord C2 exon
chr15:33648214-33648469
Length
261 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCTTTTCCTCGTGCCTGCAGAGA
3' ss Score
10.79
Exon sequences
Seq C1 exon
GTGTTCTTCAAGGCGGGGCTGCTGGGGCTGCTGGAGGAGATGCGAGATGAGAGGCTGAGCCGCATCATCACCAGAATCCAGGCCCAGTCCCGAGGTGTACTTTCCAGAATGGAGTTTAAGAAGCTGCTGGAGCGCAG
Seq A exon
GTGAGAGGTCCTTAAAGGAGATCTCCAACCCTCCTGAGGTTCAGGCTCATTCGGTGACAGTGTCCAGAGAAAGACTTCAGTGAGCCCAGCAGGAAGGAATCATCGGGGGGGGAATCTTAGGAACACAAGCCGGTCCTTAGCTTTTGAAGACCTCAGAGAGGGTGAGGTAAAGGAAGGAAGAGTGGATTTATCTAGGAAGAAGAGCCTCGCATGGGAAGGAACAGGGGAAGCTCCATCCCACTCTTTTCCTCGTGCCTGCAG
Seq C2 exon
AGACTCCCTGCTGATTATCCAGTGGAACATCCGCGCCTTCATGGGGGTCAAGAATTGGCCGTGGATGAAGCTCTACTTCAAGATCAAGCCGCTGCTGAAGAGCGCAGAGACAGAGAAGGAGATGGCCAACATGAAGGAGGAGTTCGGGCGAGTCAAAGATGCACTAGAGAAGTCTGAGGCTCGCCGCAAGGAGCTGGAGGAGAAGATGGTGTCCCTGCTGCAGGAGAAGAATGACCTGCAGCTCCAAGTGCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016983:ENSRNOT00000024186:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.058
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(27.7=61.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCGCATCATCACCAGAATC
R:
GGGACACCATCTTCTCCTCCA
Band lengths:
295-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]