BtaINT0097309 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009703 | MYH7
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MM07]
Coordinates
chr10:21333554-21334182:+
Coord C1 exon
chr10:21333554-21333690
Coord A exon
chr10:21333691-21333926
Coord C2 exon
chr10:21333927-21334182
Length
236 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
TTCTTACTCGGCTCCTGCAGAGA
3' ss Score
6.95
Exon sequences
Seq C1 exon
GTGTTCTTCAAGGCGGGCCTGCTGGGGCTGCTGGAGGAGATGCGAGATGAAAGGCTGAGCCGCATCATCACCCGCATCCAGGCTCAGTCCCGAGGTGTGCTCTCCAGAATGGAGTTCAAGAAGCTGCTGGAACGTAG
Seq A exon
GTGAGAGATGTTAAAGGGAGGGTCTCAGGCCTCCAAGGCCCAGGTTGGCTCAGAGCAGTGGAAGGAGAAATAGCACCCTAGACCTTCAAGTGACAAAGGGCCACAACACAGCTACAAACACCAGTGGTGGGCGTGGGGCCCACTGTCACAGTGCAGGATGGATGGAGGAGCCAGGGCCTCTGGGCAGGAAGGAGGGAAGAGGCTGTCTCAACGCCCTTCTTACTCGGCTCCTGCAG
Seq C2 exon
AGACTCCCTGCTGATTATCCAGTGGAATATTCGGGCCTTCATGGGGGTCAAGAACTGGCCCTGGATGAAGCTCTATTTCAAGATCAAACCACTGCTGAAGAGCGCAGAGACAGAGAAGGAAATAGCTCTCATGAAGGAGGAGTTTGGGCGCCTCAAAGAGGCTCTGGAGAAGTCAGAGGCTCGGCGCAAGGAGCTGGAGGAGAAGATGGTGTCCCTGCTGCAGGAGAAGAACGACCTGCAGCTCCAAGTGCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009703:ENSBTAT00000061306:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(27.0=61.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCGAGATGAAAGGCTGAGC
R:
ACCATCTTCTCCTCCAGCTCC
Band lengths:
308-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development