MmuINT0103580 @ mm9
Intron Retention
Gene
ENSMUSG00000053093 | Myh7
Description
myosin, heavy polypeptide 7, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:2155600]
Coordinates
chr14:55603388-55604027:-
Coord C1 exon
chr14:55603891-55604027
Coord A exon
chr14:55603644-55603890
Coord C2 exon
chr14:55603388-55603643
Length
247 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCTCCTCATCCTGCCTGCAGAGA
3' ss Score
10.65
Exon sequences
Seq C1 exon
GTGTTCTTCAAGGCGGGCCTGCTGGGGCTGCTGGAGGAGATGCGTGATGAGAGGCTGAGCCGCATCATCACCAGAATCCAGGCCCAGTCCCGAGGTGTGCTCTCCAGAATGGAGTTCAAGAAGCTGCTGGAGCGCAG
Seq A exon
GTGAGAGTCTTTAAAGGAGATCCCTAGCCCTCCCGAGGTTCAGGCTAATTCAGTGAGAGAGTCAAGAGAAAGACTTCAGGGAGCCCAGCAGGAAGAAATCATTAGGAGGGAATCTTATGAACACAAGCTGGTCCTTAGCTTTTGAAGACCTTGGGAAAGGCGAGGTCAATGAAGGGAAGGTGGACTTATCTAGGAATAAGGGCCTCAGATGGAAAGCACCATATCACTCTCCTCATCCTGCCTGCAG
Seq C2 exon
AGACTCCCTGCTGATTATCCAGTGGAACATTAGGGCCTTCATGGGGGTCAAGAATTGGCCGTGGATGAAGCTCTACTTCAAGATCAAGCCGCTGCTGAAGAGCGCGGAGACGGAGAAGGAGATGGCCACCATGAAGGAGGAGTTTGGGCGAGTCAAAGATGCACTAGAGAAGTCTGAGGCTCGCCGCAAGGAGCTGGAGGAGAAGATGGTGTCCCTGCTGCAGGAGAAGAATGACCTGCAGCTCCAAGTGCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053093-Myh7:NM_080728:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.047
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(27.2=61.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGTGCTCTCCAGAATGGA
R:
CACTTGGAGCTGCAGGTCATT
Band lengths:
295-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: