HsaINT0107857 @ hg19
Intron Retention
Gene
ENSG00000092054 | MYH7
Description
myosin, heavy chain 7, cardiac muscle, beta [Source:HGNC Symbol;Acc:7577]
Coordinates
chr14:23887419-23888504:-
Coord C1 exon
chr14:23888386-23888504
Coord A exon
chr14:23887616-23888385
Coord C2 exon
chr14:23887419-23887615
Length
770 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TGGTGCCCACCCCTCCCCAGGCG
3' ss Score
8.27
Exon sequences
Seq C1 exon
GTGAGCTGTCCCGGCAGCTGGATGAGAAGGAGGCACTGATCTCCCAGCTGACCCGAGGCAAGCTCACCTACACCCAGCAGCTGGAGGACCTCAAGAGGCAGCTGGAGGAGGAGGTTAAG
Seq A exon
GTAAGGGCTAGACTCGGGCCACCTGGCCCAAGCAAGGAGCACACTGACTAGCCTTGCATCAAATCACTTCCCTTCCCAGCAATAAGGCTGGCTGTGGACCAACAGTTCTCCAAGAATTCTAAAAAGAAATCACAGCCCAAACCCTGCCACATGCCATCTACTCCCCAGGCTGAGGCCCTCTGCTTCTGCTGCATCCCTGGACGGGAGGCAGGGTGTGAGAAGGAGGAGAGAAAATGAACTAGGGAGGCACGAGATGGCCTTGCCCGGGCACGGCTAGGGGATGTAGGGACTGCACAAATGGGTCCTGGGATTTGCAGGGCCACCTGAAAACTGGAGAAAGAAATTCAACTGGAGCCTATTCCTAGCACTTTGCTGGACTCATGAAAAAGGAGAAAGAACATGATTTTTAAAAAACTCCAGGGTTCATACTAACCTGCCTCTTATAGCTCAGTGATCTTAGGTTAGGGAAGTCCCCTAACCTTTCTGAGCCTGTTTCCCTCTCCCCAGCCAGGTAAAATGGCGGTGATGATGACCATGTCTGGTGTGGGGAGGAGCTCAGGGCCAATGGCCATGAAGCTTTTCTTAAATAGTTCACTGCTGTATTGGCATTCTTTGTTATCAGCAAACAGTAAACCATGACAGGTCCACTGGGGGTTTGGACATAGATGAGGCCAAGGGATGATGTTGAGATTGGGGTGAGGAGAAGGGCAAGGGTGGGGTTGCTTTATGGAGAAAGCTGAACCCACCTCCTGGTGCCCACCCCTCCCCAG
Seq C2 exon
GCGAAGAACGCCCTGGCCCACGCACTGCAGTCGGCCCGGCATGACTGCGACCTGCTGCGGGAGCAGTACGAGGAGGAGACGGAGGCCAAGGCCGAGCTGCAGCGCGTCCTTTCCAAGGCCAACTCGGAGGTGGCCCAGTGGAGGACCAAGTATGAGACGGACGCCATTCAGCGGACTGAGGAGCTCGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092054-MYH7:NM_000257:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.325 A=NA C2=0.394
Domain overlap (PFAM):
C1:
PF0003816=Filament=PD(4.2=30.0),PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=FE(12.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCCGGCAGCTGGAT
R:
TTGGCCTCCTCGAGCTCC
Band lengths:
311-1081
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)