RnoINT0096537 @ rn6
Intron Retention
Gene
ENSRNOG00000016983 | Myh7
Description
myosin heavy chain 7 [Source:RGD Symbol;Acc:62030]
Coordinates
chr15:33639708-33641974:-
Coord C1 exon
chr15:33641856-33641974
Coord A exon
chr15:33639905-33641855
Coord C2 exon
chr15:33639708-33639904
Length
1951 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CGATGCCCACCTCTTCCCAGGCC
3' ss Score
7.37
Exon sequences
Seq C1 exon
GGGAGCTGTCCAGACAGCTGGATGAGAAGGAGGCTCTTATCTCTCAGCTGACCCGAGGCAAGCTCACGTATACCCAGCAGCTGGAGGACCTCAAGAGGCAGCTGGAGGAGGAGGTCAAG
Seq A exon
GTAAGGCCTGAACTCAGGGCCTGGCCCAAGCAGAGAATGCAACAATAGGCCTTGGATTCTGTCTGCATCTCTTTCTTCTCTAAGAGTGAGGCTTGCCTGGTCCAAATTCTCTACAAACTGTAAAAAAGAAGTAATAACCCAGCCTTTACAAGGTATCTTTTAAAATCTGTTCCCCAGGCTGACAGAGACCCTTTGCCCTCCTATTGCTGTGCAGGGGTGGGGTTGGAGGGTAAGGAGGCAGAGAAGTATCCAAGGTAGTGGTTCTCAACCTCTGGGTTGCAACCTTTTTGGGGTTGCATATTAGATACCATGCATATCAGACATTTACATTAAGAATTTAGAACAGCAGTAAATTATGAAGTAGCAATGAAAATAATTTTATGATTGAGGGGTCACCACAATATGAAGAACTGGATTAAAGGTCACAGCATTAGGAAGGTTGAGAACCACTGGTCTGAGATGTGTTTTGGCCTTCTTGGGTGCAGATACGGGGTGGAGGGGCTACACAAAAGGGTCCTAGAATTATGAGAGCAACCTGAAGCCTGGAGAAAGAAAGCCGGAACCTATCCCTAGCACAGTACTGAGTTTACGGTAAAGAGATGAGACCATGAGTTCTTAAAACTCACAGAGCGATGGCTAGGGACATAGCTCAGTCAGTGAAGTGCTTGCCACAGGAGCATGATGGTGTTTGGGCCCAATTTCCAACACTTGTGATCCCAGCACTGAGATGGCAGAGACAGGCGTATAGCTTGTCTTTACTACTTTGTGGATTCTTTTTCCTCCTACCCTTCTCTTCCACCCTTCCAACCATCTAACACTGAATAAGAAAGAAAAAAAGGATAGAAAGGAAAGGAAAGAGATCCCTGAATAAAGTCAGAAGTTGGAAAGGGAGCAACTACTTCCTGCTGATTAAGGGTGTTGAGTTTGAGTTGATTGGGGCAAGTTTGATTTTCACCATCGGGATCTCTAATTATTATTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTCCTCTTCCTCTTCCTCCTCCTCTTCTTCCTCTTCTTCTTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCTTCTTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCGCCTCCTCCTCTTCCTCTTCCTCCTCCTCCCCTCTTCTTTGCACATGACTACTTAACAAACCATGACCAACAGCAACCAACATCCAACACTGTCTCTCTGGGCCCTACCATTTATATACCCTCTGAAAAGTACCTAGAATTCCAAATGCTGCACAGTTGCAGAAAGTACCCGCAGCTGGAAAAATCACACCCCTGCCAGAGCACGAGCCAAACCACAGTCAGCTGCTGTGGACAATCTGAAGTAACCCCACAGCCCCACACCTGGGATTAAAACAAACACACATTCTAATATTTCTGTGTTCTTTTAAGAAGCCAAAATTCTAAAATTATCACTACACAGGAAGATCTCTTGAACTGACTGGCAGCCAGCCTAGCCAAGGTGGTGATCCTTAAATCTCAGCGACAGACTTTGTCTCAAAAAATATGGTAGACAGTGTCTGTGAAATGATACCCATGGCTGACTTCAGAGCTCCCTACACATGTACAAACCCCCAAAACTACCTCTTTTAGTGTGGTGATATAAGGAAAACTTCCTGGTGTCTCTGTTTGCACCTGTAACTGCACTGGGGGAGCAAATCTGCTGCAAGGAGCCTCGGGCAGTGGGCACAAGAGCATTGTAAACAGTGCCGCACTGCTTTGTTGTGTAGGGTCCTCCTTGCTCAGCAAACCACACCAGGTTCACTGGAGAGCTGGAGGTAGAAGTGGCCAAGGGAGCATGCTGGGCCTGGGGTAAGGGGATGGCAGAGGAGAAAGCTGATCCACTTCCTCGATGCCCACCTCTTCCCAG
Seq C2 exon
GCCAAGAATGCCCTGGCCCACGCACTGCAGTCAGCCCGGCATGATTGCGACCTGCTGCGGGAACAGTATGAGGAGGAAACAGAAGCCAAGGCTGAGCTGCAGCGTGTCCTGTCCAAGGCCAACTCAGAGGTGGCCCAGTGGAGGACCAAGTATGAGACGGACGCCATACAGAGGACGGAGGAGCTGGAGGAAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016983:ENSRNOT00000024186:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.325 A=NA C2=0.394
Domain overlap (PFAM):
C1:
PF0003816=Filament=PD(4.6=32.5),PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=FE(12.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(21.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGATGAGAAGGAGGCT
R:
TTGGCTTCCTCCAGCTCCTC
Band lengths:
302-2253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]