BtaINT0097317 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009703 | MYH7
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MM07]
Coordinates
chr10:21339160-21340473:+
Coord C1 exon
chr10:21339160-21339294
Coord A exon
chr10:21339295-21340276
Coord C2 exon
chr10:21340277-21340473
Length
982 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTCGGTGCCACCCCTCCCAGGCG
3' ss Score
6.1
Exon sequences
Seq C1 exon
TTCGGTGCCTCTTCAGGTGAGCTGTCCCGGCAGCTGGATGAGAAGGAGGCGCTGATCTCCCAGCTGACCCGAGGCAAGCTCACCTATACCCAGCAACTGGAGGACCTCAAGAGGCAGCTGGAAGAGGAGGTTAAG
Seq A exon
GTAAGGCCCAGAGTCAGGCCACTCGTCCAGCGTACTGGCTGGCCTTGCATCCACCACTTCTTTCCCAAGAATGAGGCTTGCTGTCTACCCAGTATTTTCCCATTTTCCAAAAAGAAAATGCCGAGACCCTACCATGTGCGTGTGTATGTGTGTGCACACAGTCGAGTCCAGTCTTTGCAAAACCATGGACTGTAGCCCACCAGGCTCCTCTGTCCATTGGATTTTTCAGGCAAGAATACCAGAGTGGGTTGCCATTCCCTCCTCCAGGGGATCTTCCAGACCCAGTAATCAAACTTGTGTCTCCAGCATTAGCAGGCAGATTCTTTACCACTGAGCCCCCTGGGAATCCCAGGCTTTACCATATGCTTCCTAATTCTACCTCCCATTCAGAGGCCTTCTGCCTTTCTGCAGCCATCTCTGGAGGGCATGGAGTAAGAGGTGGGGCTGGGGGGAATGAGGTGAAGAGAGGAAATAAACTAGAGAGGTGCGATGGCCTTGGCTGGGCATAGGTATGGGATGCAGGAACTGTACAAGTGGTCCTGGGATTTGCAGGGCAATCTGAAAACTGGAGGAAGAAACTCAACTGGATCCTATTTCGAGCACTTTGCTGGGCTCATTAAAAAGGGTAAAGAATATGAATTTTTAAAAAGGTCAGGGCTCAAATCCTAATCTGCCTCTTAAGAGCTTGGTGATCTTGGGGAAATTGCCTAATATCTCTGAGCCTCCATCTCCTCCGCTGTAAAATGGCGGTGAGGATGATAAAGCCTGCTGCGTGAGAAGCATGAGGGGGATGGGCACAAAGCATTTTGTAAACAGTGAGGCCCTGTATGGACTTTCTTTGTTAACAGTACTCGGTAAACTGTTCCAGGTCCAGGGATTTAGAAACAGGTGAGACTGTGGGAGGATGTTGAAATTAGAGTGAGGAGTCAAGCAGTGCATCACAGGGTAAGCTGAGCCCACCCCTCGGTGCCACCCCTCCCAG
Seq C2 exon
GCGAAGAATGCCCTGGCCCACGCACTGCAGTCGGCCCGGCATGACTGTGACCTGCTGCGGGAGCAGTACGAGGAGGAGACTGAGGCCAAGGCCGAGCTACAGCGCGTCCTGTCCAAGGCCAACTCAGAGGTGGCCCAGTGGAGGACCAAGTACGAGACGGATGCCATCCAGAGGACGGAGGAGCTGGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009703:ENSBTAT00000061306:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(5.1=100),PF0003816=Filament=PU(14.3=95.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGTGCCTCTTCAGGTGAG
R:
CTCCTCCAGCTCCTCCGTC
Band lengths:
327-1309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development