MmuINT0103589 @ mm10
Intron Retention
Gene
ENSMUSG00000053093 | Myh7
Description
myosin, heavy polypeptide 7, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:2155600]
Coordinates
chr14:54975879-54978701:-
Coord C1 exon
chr14:54978583-54978701
Coord A exon
chr14:54976076-54978582
Coord C2 exon
chr14:54975879-54976075
Length
2507 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TGATGCTCACCTCTTCCCAGGCC
3' ss Score
7.64
Exon sequences
Seq C1 exon
GGGAGCTGTCCCGGCAGCTGGACGAGAAGGAGGCTCTGATCTCTCAGCTAACCCGAGGCAAGCTCACATATACACAGCAGCTGGAGGACCTCAAGAGGCAACTGGAGGAGGAGGTCAAG
Seq A exon
GTAAGGCCTAGACTCTGTGTCTGGACAAAGCATAGAGTGCACCAATTGGCCAGAATATGGGTCTCTTTCTTCTCTAAGAGTGAGGCTTGTCTGGTCCACAACTTACTACAAACTGTAAAAAAGAAGTAATAACACAGCCTTTACTAAGTATCTTTTAAAATCTGTTCCCCAGGCTGAGAGAGGCCCTTTGCCCTCCTACTGCTGTGCAGGGGTGGGGAGTAGGAGGGTAAAGAGGCAGAGAGGAAATTATCTAAGATAGTGATTTTCAACCTCTGGGTTGCGACCTCTTTGGGGTCAAATAGTAGATATCATGCATGCCAGACATTTACATTCACATCTAGAACAGTAGTAAATTATAGTGTGAAGTAGCCATGACAATTTTATGGTTGAGGGTTCCTACAACGTGAGGGACTATATTAAAGGCCACAGAATTAGGCAGGCTCAGAGCCTCTGATCTGAGGAGATGGGATTTGGCCTTCTTGGGTGCAGATATTGGGTGCAGGGACTACACAGAGGGGTCCTAGGATGATGAGAGCAATCTGAAGCCTGGAAGAAGAAAGCCGGAGCCTATCCCTAGCACAGTACTGAGTTCATGGGAAAGAGATAAGGCCATGCGTTCTTAAGCCTCACAGGGCTCTGGCTGGGGAGAGAGCTCAGTCAGTAAAAGGCTTGGTGCAGGAGCATGAAGGTGTTTGGTCCTGAGTTCAGTCACCAGCACTTGTAATCTTCGCGTGGAGATGGCAGAGACAGCCATGTAGCTTGCCTGTTCTACTTTGTGGATTCTTTTTCTTCCACCCTTTCAACTCCCTAACACTAGATAAGAGAGAAAAAAGGATAGAGAAGAAAGGAAAGAGATCCCTGAATAAAGTCAGAAGTTGGAAACCGGACGATACTATTGTTAGACTATCTCTTCTCATTAGGGATGATGCTATTGTTACACTACCTCCTTCTGATTAGGGGCGTTGAGTTTGAGTTGCTTGAGGAAAGTTTGATCTTCACCACCAATATACCTAGTTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCATCTTCTTCTTCCTCTTCCTCTTCTTCCTCCTCCTCTTCCTCTTCCTCTTCTCCTTCTTTTCCCTCCTCCTCTTTCTCTCTCTCCTCCCCTTCTTCCTCCTCTTCTGTTCCCTCCTCTTCCTCCTCCTCCTCCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTGCTGGAACTCACTGTAGAGCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCAAAGTGCTGGGATCAAAGGCATGTGCCACCACGCCCCGCCTCTTCCTTTCTTCTTCTCCTCCTTCTCCTCCTCCTCTTCCTCCTCCTCCTCCTTCCTCTTCTTCATCTCCTTCTCCTTCTTCTCACTCCTCCTCCTCTTTCTCTCCCTCTTTCCCTTCTTCCTCCTCTTTCTCTCTCTCTCTCTCCTCCCCTTCTTCCTCCTCCTCCTTTTCTTCTTCTGCTTCTACTCCTACCTACTCCTCCTCTTCTACTTTCTTCTTTGCACATGACTACTTAACAAACCATGAGCAACAGTGACCAACAGCAACCAATAGCAACCAACAGCAACCAACAACCCCCAAAATCCAACCCTACCTCTCTGAGTCCTAGCATTCATATACCCTCTGAAAAGTCCTTAGAATTCCAAATGTCACACAATAGCAGAAACTATCTGCAGCTGACAAGATCACACCACTGCTAGAGCACGAGGCAAATCATAGTCAGCCTCTGTGGACAATCTGAAGCAGCCCCATATCCCACTCCTGGGATTAAAACAAACACACATTCTTATAATACTTCTGTGTATTTTTTTTAAAAAAAAAAGCCAAAATTCTAAAATTATCACTACACAGGAAGATCTCTGGGACTGACTGACAGTCAGCCCAGCCAAGTTCTGAGGTCTTGGTGACAGACTTTGTCTCAGAAAAATATGGTATATGGTGTCATGTGAAAAACCCATGGTTGACTTCAGACCTCCCTACATATGTACAAACATCCCAACTCTTCCCCACAAAACCCCAAAGCTTAGTACTAACCTACCTCTTATAGTGTGGTAATCTCAAGGAAAACTTCCTGATGCCTGTTTGCACCTGTAAATGCACTGGGTGATCAGCTCTTCTGCAAGGAGCATCAGGCAGTGGACACAGAACTTTGTAAACAGTGCAGCACTGTTTTATTATTTAGGGTCATTCTTGCTCAGCAAACCACACCGGGTTCGCTGGAGAGTTGGAGGTAGATGGGGCCAAGGGATGTGTTGAGACTGGGGTAAAAGGATGGTGGAGGAAAAAGCTGACCCACTTCCTTGATGCTCACCTCTTCCCAG
Seq C2 exon
GCCAAGAACGCGCTGGCCCACGCACTGCAGTCAGCACGGCATGATTGTGACCTGCTGAGGGAACAGTATGAGGAGGAGACAGAGGCCAAGGCTGAGCTACAGCGAGTCCTGTCCAAGGCCAATTCAGAGGTGGCCCAGTGGAGGACCAAGTATGAGACGGATGCCATACAGAGGACAGAGGAGCTGGAGGAAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053093:ENSMUST00000102803:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.325 A=NA C2=0.394
Domain overlap (PFAM):
C1:
PF0003816=Filament=PD(4.2=30.0),PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=FE(12.7=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(21.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types