HsaINT0107932 @ hg19
Intron Retention
Gene
ENSG00000133020 | MYH8
Description
myosin, heavy chain 8, skeletal muscle, perinatal [Source:HGNC Symbol;Acc:7578]
Coordinates
chr17:10307647-10309494:-
Coord C1 exon
chr17:10309358-10309494
Coord A exon
chr17:10307903-10309357
Coord C2 exon
chr17:10307647-10307902
Length
1455 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
ATATTTTCATGTCATCGCAGAGA
3' ss Score
6.48
Exon sequences
Seq C1 exon
GTTTTCTTCAAAGCTGGACTTCTGGGTCTTCTGGAAGAAATGAGAGATGAAAAATTAGCCCAAATTATAACAAGAACACAAGCTGTCTGTAGGGGATTCCTAATGAGGGTAGAATATCAGAAGATGTTGCAAAGGAG
Seq A exon
GTAACAATCATTCAGAATATCAGAATTATAAGGTCCCTTAAGGACTATCAATCAGTCTTGTTCATTCATTAATTCTTTCATTTGGTGGCTAATAGTTCCTCTCACCCAATTCAGAACTCACTCCTACAACACAGCAGCCTTTGCTTCAGCTCTCACACTTGGATTCCTTTCAAAACTTCTCTCCTACCTCCAGCCATCTCACATACAGCCACAGGAATAGTTTGCAGTAAGCAGTATTTTCATCAAGCTAGTTGCTTGCTTGCCTGTCAAGGCCCTCTCTATTCCCCACCTCATCTATCATTTCCAAGCACATAGCCTTTTCCAGCCAGGCTAAACAATTTGCTTATCTACTAATCTCTCATTTGCTTATCTTCTTATCTCATCTCTCCCCTCATCCTAATTTATCTATTTACCAATTTAAAACTTTAATTTCCCCTTTCTGTAACTAATCTCACCCAGTTTATCTACCCAACACTATTGCATTCCCTCTACTTACACACACACTGTGCATTCATTTTTCTTATCTGTAATCATTTAGGCCTGCACTGGAAGTGTTCCTGAGTCTTTCCCATGTGTGAACGTTATGGTTTGTGTCAAGGTATCTGCTTTCATAGAGTTACAAGTCTTAAAAACTGGACCTATAGAGATAGAATTTCCATTTTAACAAGCTTGAAGAAACATACACATTGCTACAAGTAGTCAAACCTAGCCAGTCTATGGCTATAGTTTGCAGTAGGGGTACCTTTTATTACTATTTTTCACTTTATTTCAATAAAATAAATTTTAGAGCTCAACAGATGCTGAATGCCTCGCAAATATTAACAATCCAATTAATCAGTTAAGACTGAGGCACTTGAAAGAATTTGAGATAAGCCAGTGTATTATCTGAAGAAGCTAGCAAAAAAAGTTTATAGAGTGGATAATTCAGTGTTGTTCAAAATAAGAGGAGCAACTTCAAGGAAGAGATGACAAATCATTCGCTCAGTTTAGGTGGGCCATTCAGAAGGCAACCTATGTCATTTCACAGTTCTCATCCATATGCCCACAGACAGGCAGCACAATCAACATGCAATCACCATGCCCACCCTCAAATCACTAATACTGTCATATGTCAAATGGTATGTGCTGATCATACATTCAAAATATTCACCCCTAAAGTCACTCTCTTGGCTAGTTTGATAGGGATTGAGAACACAGAAGATGTGCTCAATATGAACCGTACTCATATTAGCAAAGTGGTTATACTGAGGGCTACTGACCATGAGTGTGAGCGCGAGAATGTGTGTACATGTGTGTGTGTGTGTGTGTGTGTGTAAAGCCTGCATATAATATATAGAGAATGTGACATATTTATTTGTGAGCGGCATTCATTAAAAGGGAAATTTGTGTGTGATAAGTAACAATAACATTGGCTCTGATGGATTAGTCTACACTGATATTTTCATGTCATCGCAG
Seq C2 exon
AGAAGCACTTTTCTGCATCCAGTATAATGTCCGTGCCTTCATGAACGTCAAGCACTGGCCCTGGATGAAACTCTTTTTCAAGATTAAGCCCCTCCTCAAGAGTGCAGAGACCGAGAAAGAGATGGCCACCATGAAGGAAGAATTCCAGAAAACCAAAGATGAACTCGCCAAGTCAGAGGCAAAACGGAAGGAGCTAGAGGAAAAAATGGTCACTCTCTTAAAAGAGAAAAATGACCTGCAACTCCAGGTTCAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133020-MYH8:NM_002472:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.151
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5),PF0061222=IQ=WD(100=45.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCTTCAAAGCTGGACTTCTGG
R:
TTTTTCCTCTAGCTCCTTCCGT
Band lengths:
342-1797
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)