BtaINT0097478 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009702 | MYHC-FETAL
Description
Bos taurus myosin, heavy chain 8, skeletal muscle, perinatal (MYH8), mRNA. [Source:RefSeq mRNA;Acc:NM_001206174]
Coordinates
chr19:30044841-30046969:-
Coord C1 exon
chr19:30046833-30046969
Coord A exon
chr19:30045097-30046832
Coord C2 exon
chr19:30044841-30045096
Length
1736 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
ATCCTTTCCTGTCATTTCAGAGA
3' ss Score
7.95
Exon sequences
Seq C1 exon
GTTTTCTTCAAAGCTGGCCTGCTGGGTCTTCTGGAAGAAATGAGAGATGAAAAGTTGGCCCAGATTATAACAAGAACTCAAGCTGTCTGTAGGGGATTCCTAATGAGGGTAGAATACCAGAAAATGCTGCAAAGGAG
Seq A exon
GTAACAACTATGCAGAGTATCAGGACGATGCGGTCCCTCCGGGACTCCACTACATCAGTCTTGCTCACTCATTAACTCTTCCATTTTTCAGTTCATATGCGCTTCTCACCCAGTTCAGAACCCACTCCTACAACACATCAGACTTTGCCCAAGCCCTCACATTTGGACTCCCATCAAAACTCTCTCCTCCCTCATTGTCTCCCTTCTATTCCTCTCACACACAGCTGCATCAAGCACTGTTCTCATCATGCCATATTCAGTTGCAGTTCCCCATGGTCTCCCCTGTCAAATCCAAGTTGCCTCTGTGTCTGCCAAGGCCCTCTCTATTCCCCACCTCATCTGTCATCTCCAAATGCCTTGTCTTTTCCAGCCAGCCTAAACAGTTTGCTTATCTCTTATATTCTTATGTTTGCTCAAGCCCTCTCCTCTTAGCCTAATTTAGTCACTCACCAGCTCACAACTTCCATTTCCTCTTCCCCTAATTAACCTCATCCAGCTCCACTGACCTAGCACGACTGCATTCCCTGTCCTTACACACACGTTTTGCATTCAGTCTGCTCATGCACACTATTTATTTCTGCATTATAAGTTTTTCCAAGTCTTTCCATGTGTCAACATTATGGTGTATGCCTTCTTGGTTATGGTTCTCATAAATTGGACCTGTAGAAATAGAATTTCCATTTTAATAAGCTTGAAGAAGCAAACACACTGTTCAAAGGCAGTAAAACTTTGCCAGTTTACTGCTACAGTGTGCAGAAGGGATATCTTTTATTACTATTTTTAAAATGTTATTTAAATAAAACAAATTTTGGAGCTCAATACAAGCTAAATGCTCTGTAGACAACAATCTAGTTGAGCGGGTAAGAATGAGTAATTTGAAAGGATTTGAGAAAAGCCAGTATATCATTTGAAGAAGCTAACAAAAGAAGTTCACAGAGCAGATAATTCAGGGGTAATTAAATAAGAGGAGAGGCTTCAAGGAATACATGATAAATCACAACCTCAACGTAGGTTCAGTTCAGTCACTCAGTCGTGTCCGACTCTTTGCGACCCCATGAACTGCAGCATGCCAGGCCTCCCTGTCCATCACCAACTCCCAGAGTCCACCCAAACCCATGTCCATTAAGTTGGTGATGCCATCCAACCATCTCATCCTCTGTTGACCCCTTCTCCTCCTGCCCTCAATCTTTCCCAGCATCAGGGTCTTTTCAAATGAGTCAGCTCTTCGCATCAGGTGGCCAAAGTATTGGAGTTTCAGCTCCAGCATCAGTCCTTCCAAGGTGGAGCAATTCAAAAAGCAAGCCATGCCCTTTCACGGTTCTCATCAGTGTGCCCACAGCTAAGCTGCATGATCCACTTACAACTGCCATACCCACTCCCAAATCACTAACACTGTGATTTCTCAGATGTTCTTAAAATGGTGCATGTTGCTCATATATACAAAGTATCCCTCCTCTAAAGTCAGCTTCTTTGCTAGTGTGACAGGGTCTTGGGAACACAGAATTGTTAAGTATGAGCAGTGCACATTAGCCAACAGGTCATACTGAGGACCACTCTAAGGGGGAGTGGGTGGGAATGTGTGTTTATGTGGCCTGCATATAAAATATACAGAATCTGGCATATCATTTATATGTGGGGTGGTCATTAAAAGGGGAGTTTATATGTTTAAAAAAAATAACAACAACAACGTTGTCTCTAATGGATCAACCTACACTGATCCTTTCCTGTCATTTCAG
Seq C2 exon
AGAAGCCCTTTTCTGCATCCAGTATAACGTACGAGCCTTCATGAACGTCAAGCACTGGCCTTGGATGAAACTTTTTTTCAAGATCAAGCCCCTCCTCAAGAGTGCAGAGACAGAGAAGGAGATGGCCACAATGAAGGAAGAGTTTCAGAAAACCAAGGATGAACTGGCCAAATCAGAGGCCAAAAGGAAGGAACTGGAGGAAAAAATGGTGACTCTCTTGAAAGAGAAAAATGACCTACAGCTCCAGGTTCAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009702:ENSBTAT00000061119:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.140
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5),PF0061222=IQ=WD(100=45.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGATGAAAAGTTGGCCCA
R:
TGAACCTGGAGCTGTAGGTCA
Band lengths:
349-2085
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development