RnoINT0096599 @ rn6
Intron Retention
Gene
ENSRNOG00000050042 | Myh8
Description
myosin heavy chain 8 [Source:RGD Symbol;Acc:620356]
Coordinates
chr10:53834030-53835793:+
Coord C1 exon
chr10:53834030-53834166
Coord A exon
chr10:53834167-53835537
Coord C2 exon
chr10:53835538-53835793
Length
1371 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
CAGCTTTCCTCACATTCCAGGGA
3' ss Score
6.98
Exon sequences
Seq C1 exon
GTTTTCTTCAAAGCTGGTCTCCTGGGTCTCCTGGAAGAAATGAGAGATGAAAAGCTGGCCCAGATTATAACAAGAACACAGGCGGTCTGTAGGGGATACCTAATGAGAGTCGAGTACCAGAAAATGCTGCTGAGAAG
Seq A exon
GTAACAGCTGTGGACACTCTTGAGGATCACAAGGTCACCCCACACCTTGTACCCCACACCCTAGGGACTGTCCACCAGTTTTCCTCATTCACTGTCCTCTCAATCCGAGATTAGTATGAGCTCTCATCCCTACAACACATAACCTTAGTGTCACCCTTCAGGTTAGACTTCCCAGAATTCCTCTCTTGACCTCTGCTCTGCCACCCCACCCGTCTCACGCACAGAAACATCCTGCAGCAAGCAGTTTTCATCACCCCACATCTCCATTCCCAGATCCCCATGAAATTCTACATCAAATCCAGGCTGCTTCGCTTGGCTGTCAAGGTTCTATTCCCCACCGTATCTTTCACAGCTAACCGTGCAGCCTTTCCCAGCCATGCTAAACAGTTCACTTACCATTTATTCTCATGTCTGAATTGACATTGTCCACTCACCCAAATCTACCTAGTGAGAAGTCCCTTTTCTTCTTTCCAAAGCTAACATCCTCCAACTTATCTACACGACATTTTTATGCATTGCTCTAGCCCTGCACACATTTTACTAATTTTGTTCACCTGGATTTTTAAGGTTGGCATAATAAGAGTTTGGGGGTTTTTTTCCCATCCATCATAGCTTGTGTCATGATATCTGTCTTCTCAGAGTTGGATTTCCTAGCAACTGAACCAATAGAAATAAAACCTGCCTGGTAATAAACTTAAGCCACCCAAACATTGCCAGCCCATTGCTATCATTGAAGCACTGTACCAATCTTACCATTTTGATTTTTTTAAATTTAAATTAAACAACTTTGGAGCTTACTTGCTGCTGAAAATGTCCCCAAATGTTAATGAACTTATGCAGACAAGACTAAGCTATTCAGAGAATTTAGAAAAGCCAGCATATTACCTGAAGACACCAACAGGAGAAGAGTGGCTGATTCAGCAGTGATCAAAACAGGAACCAGGAACGGTTTGAAGGAAAGAGTGGCCGGGCTGAGGTGAGGTGAATCCTTCAGCCTATGGCCCCTCACGTCGAAGCTCACGGCTATGTGGCAACAGCAGGACAGCACTATCTGATTACAATGGCCATGTCCTCCTAGCAACTCCTCCCACATGTGTCTGCTCTTTCTGTGGCAAGAGTCTCTCAGAGGGTATAGTCGGTGCCCTCCACACTCAGCACATCCTTTCCAGCTCGGCAGGAGCTGAGGACACTCAATTGCTCTGTATGACTAGCATTCATATTAGCAGAGTAGCAATACTCTGAAGACGATAGACTCTATCTCTGATTGTTAGGATGAACATGTGTCAGGACAGGAAAGCCATTGTGTCTGCAATAAATCTCAATCACACTGCTGCCAGTGGAATAATTACACCAGCTTTCCTCACATTCCAG
Seq C2 exon
GGAGTCCATCTTCTGCATCCAGTACAACATCCGCGCCTTCATGAACGTCAAGCACTGGCCCTGGATGAAACTCTTCTTCAAGATCAAGCCCCTGCTGAAGAGCGCTGAGACCGAGAAGGAGATGGCCACCATGAAGGAGGAGTTCCAGAAAACCAAGGACGAGCTCGCCAAGTCGGAGGCAAAGAGGAAGGAGCTGGAGGAGAAAATGGTCACGCTTCTCAAAGAGAAGAACGACCTGCAGCTCCAGGTTCAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050042:ENSRNOT00000057260:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.140
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5),PF0061222=IQ=WD(100=45.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAAGCTGGTCTCCTGGGT
R:
GCGTGACCATTTTCTCCTCCA
Band lengths:
346-1717
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]