GgaINT0128196 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:364266-365435:-
Coord C1 exon
chr18:365299-365435
Coord A exon
chr18:364522-365298
Coord C2 exon
chr18:364266-364521
Length
777 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
3' ss Seq
ATATGTTCAATACCTTTTAGGGA
3' ss Score
7.52
Exon sequences
Seq C1 exon
GTGTTCTTCAAAGCTGGGCTGCTGGGACTCCTGGAGGAGATGAGAGATGAGAAGCTGGCACAGCTCATCACTCGCACACAGGCCAGGTGCAGGGGCTTCCTGATGAGAGTGGAGTTCAAGAAAATGATGGAAAGAAG
Seq A exon
GTAGATATATACAGTTATTTGGCCTGCTGGGTCAATCCTCATCACACACCAATGACATGAAAACATCTGAAAATGAGATCCATCTCAATTAATCTCATATATATATATTTCTCATTAGTTCACTTTATCAGTATGGATGTGTTTGGAAGTATACAATGACAGTAGATGAAGTAAAAAACTTGTTTTCATTAAAAATCCAGTATAAAGCCCTGTTTTGGGGGGAAAAAAAATATATATTTAACTTATGTCACCCTTTGTAGCAATTTTTACTGAATTCTTTAAATGTCCAGAATTCAGATATGCAATCTAAAATAACTGTAAATAAATATGATAATAATTATAAATATAAATTATAAATAAAGTAATTATTCAAATTATTTTAGGTTACCATTATAATCAAAGGGAAGAAACACATACCTCTAGCACAAGAGGAGCCTTCCCTTCCCTTGAATAACTCATGAAATGAACCAAGTCCCCTCCTGGAGGTGATCCTTTTCTGTGGCCATAAAAACGGGTCAAACATCTGAACTTCAAATCTGTTCATACAAATTGACTATCTTTACATCACAATAGGACATTTACTTCACATATTCATAAAATATATATAAAATATATATGTTTGTGTGTCTATAATCCATTACATAGAGAACTACATGAAGTATTCTATGTAGAACAGTCTCTACTTATATATATATAAGATATATTGTTATATAGACATTTAATAATGTATTACACATTTAAAAATATATGAGATAATATATGTTCAATACCTTTTAG
Seq C2 exon
GGAATCTATCTTCTGTATCCAGTACAATGTTCGTGCATTCATGAATGTCAAGCACTGGCCCTGGATGAAGCTGTTCTTCAAGATCAAGCCCCTGCTGAAGAGTGCAGAATCTGAGAAGGAAATGGCCAACATGAAGGAAGAGTTTGAGAAGACCAAGGAAGAGCTTGCAAAGTCTGAGGCAAAGAGGAAGGAGCTGGAGGAGAAAATGGTGTCCCTGCTGCAAGAGAAAAATGATCTGCAACTCCAAGTGCAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023884:ENSGALT00000040060:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.209
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5),PF0061222=IQ=WD(100=43.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(26.7=62.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTCAAAGCTGGGCTGCTG
R:
TTGCAGCAGGGACACCATTTT
Band lengths:
357-1134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]