Special

MmuINT0103658 @ mm9

Intron Retention

Gene
Description
myosin, heavy polypeptide 8, skeletal muscle, perinatal [Source:MGI Symbol;Acc:MGI:1339712]
Coordinates
chr11:67106344-67108114:+
Coord C1 exon
chr11:67106344-67106480
Coord A exon
chr11:67106481-67107858
Coord C2 exon
chr11:67107859-67108114
Length
1378 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
ATCTTTCCCCCACATCCCAGAGA
3' ss Score
6.04
Exon sequences
Seq C1 exon
GTTTTCTTCAAAGCTGGTCTCCTGGGTCTCCTGGAAGAAATGAGAGATGAAAAGCTGGCCCAGATTATAACAAGAACCCAGGCGGTCTGTAGGGGATACCTAATGAGAGTGGAGTATCAGAAGATGCTGCTGAGAAG
Seq A exon
GTAACAGCTATGTATATTCTCGGGATCACAAAGTCAACCCCCACCCCACACCCTGGGGACTGTCCATCAGCTTTCCTCATTTACTGATCCTCTGATTCTGAGATTAGCATGAGCTTTCACCCCTACAACACATTAACCTTAGTGTCACCCTTCAGGCTAGACTTCCCAGAACTTCTCTCTTGACCTCTCGCCCCACCCCTACCCCCATCCATCTCACACACAGAAACATTCTGCCACAAGCACTTTTCATCAGCCCACATCTCTGTTTCCAGCTCTTCATGAAATTCCACATCAAATCCAGGCTGCTTTGCTTGGCTGTCAAGTTTCTATTCCCCCACCGTATCTTTCATATCTTTTTTCATATCTTTCATATCATGGCTTTTCCTAGCCATGCTAAACAGTTCACGTACCACTTATTTTCATGTCTGAACAGACCTGCCTAGTGACAAGTCCCTTTTCTTCTTTCCCAAATGAGCATCCTCCAACTTATCTACACAACATTTTTTTTTACATTGCTCTAGCCATGTACATATTTTACTAATTTTGTTCATCTGGATTTTTAAGGTTGGCATAATAAGAGTTTTGGTTGTCCCCCACCCCCAGTCCATCTGTATCACAGCTTGTGTCATGATATTTGCCTTCTCAGTGTTGGATTTCCTAGCAACCAAACCAATAGAAATAAAACTTGCCTGGTAACGAATTTAAAGATGCCTACATATTGCATAAGCCACCCAAACATTGCCAGCCCATTGCTATCATTTGAAGAGCTGTACCAAACTTACCATTTGAATTTTTTTATTTAAATAAAACAACTTTGGGGCTTACATGATGCTAGAAATGTCTCCACATGTTAATGAACTTATTGTGCTGGCAATACTAAGCCACTCAGAGAATTTAGAAAAGCCAGTATAGTACTTGAAGACAGCAACAAGAGAAGAGTAGCTAATTCGGTGGTGATTAATACAGGAGCAGTTTGAAGGAAAGAGTAGCTGGGCTGAGGTGAGGTGAACTCTTCAGCCTATGGCTTCTCACCTCGAAGCTCACAGTTGAGTAGCAGCGGCAGGATAGCACAGTCTGATTACAATGGTGGTGGCCTCCCATACACTTCTGCCACGTGTGTCTGCTCTTTCTACGGCAGGGGTTGCTCAGATGGTATAATCTGTACCTTCTACACTCAGCCCACCCTTGCCATCTTGGCAAGGAACTGAGAACACTCAATTGTTTCATATAGCAGAGTAGCAATACTGAGGACAATAGGCTCTAACTCCGATTGTCAGGATGAACACGCTACAGTACAGGAAAACCATGTTGCCTGCAATAAACGTCAATCACACTGCTGCCAGTGAAATGATTACCCCATCTTTCCCCCACATCCCAG
Seq C2 exon
AGAATCCATCTTCTGTATCCAGTACAACGTCCGCGCCTTCATGAACGTCAAGCACTGGCCCTGGATGAAACTCTTCTTCAAGATCAAACCCCTGCTGAAGAGCGCAGAGACCGAGAAGGAGATGGCCACCATGAAGGAGGAGTTCCAGAAAACCAAGGATGAGCTGGCCAAGTCGGAGGCAAAGCGGAAGGAGCTGGAGGAGAAGATGGTCACTCTTCTCAAAGAGAAAAATGACCTGCAACTCCAGGTTCAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055775-Myh8:NM_177369:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.112
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=PD(0.4=6.5),PF0061222=IQ=WD(100=45.7)
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
LOW PSI
([1])
Chicken
(galGal3)
LOW PSI
([2])
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAAAGCTGGTCTCCTGGG
R:
ACCATCTTCTCCTCCAGCTCC
Band lengths:
342-1720
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types