HsaINT0108442 @ hg19
Intron Retention
Gene
ENSG00000141140 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:26234]
Coordinates
chr17:34861136-34862447:-
Coord C1 exon
chr17:34862295-34862447
Coord A exon
chr17:34861244-34862294
Coord C2 exon
chr17:34861136-34861243
Length
1051 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CCATGGTCTCTCATCTGCAGGCC
3' ss Score
10.34
Exon sequences
Seq C1 exon
GACCCTATCCCACCTGAGCTGACCAGGCTCCTGCAGCAATCCCAGGACCCCCTGCTCATGGGGCTGTTTCCTACTAACCCCAAAGAGAAGACCCAGGAGGAACCCCCTGGCCAGAGCAGGGCCCCTGTGTTGACCGTGGTGTCCAAGTTCAAG
Seq A exon
GTGGGTCTGATGTGCTGATGGGAGGTGCTTGGTTCAAACTCCACGGTCTCACAAATATTTATTGAGCACCTGCCAGGATCGGTGCTGTTTGTTGGGGAGCAGTGGCAAGTCAAGTAGATGTGGTCCCAGTCCCCTGGAGTTTATACTTCAGTGTGGAAGACAGAAACAGTAGACAAATAGGCTATCAGGTATAATATGATGGGAAGTCTAGGGGCCTATGGGGGCACTATGCAGCCTCTCACCCCCTGCCACTGGGGTGCTCATGGGAAGAGGATCAGCTACATGAGCTTCTTTGACCTGGCTCATCTCCAGCTGTCTAGCTTCCTGTTCTAACCCTACCCTCACTCACTTCTCTCACATCGTCTGCTTTCTACCACCTCTCAGTCCTTGCATGTACCGCCCCACCTTCCTGGGATACTCTTGACTACTGCCCCATCAGCTCCACCTCACTCCCATCCTCCACGCCCCTTTTCCTAGTTTAGTCCTTCTCATCCTTCAGACTTTAGCTTTATCACCACCACCTCGAGGAGGCACCTGGAAAACCAGGTTTGATTAGCACCTTCCTACCCAGCCTCAAACACACCCCCGAGGGTGTTCATCCAACATGTGTGGCCCATTGGAGTGAGCTCTGACATGGCAGCAGGCAGCCTGTGGCACAGCCTCCAACACACAGGATGAGCTGAGTGATAACAGTTGTTGCTGGACGAATGGCAAGAAGTTTTGAGATTGTTCTTTTCTAAGAAGATTGCTCTGGGGAGAAGTGGGGAGGGGAAAGAGGAGGAGATTGGATTCAGGGAGAACAGTCAGGGAGGATCACAGGTTTAGAAGGGTCCCTTAAGACAGAGGTGAGGAGCATGGGAAGTTGGGAGAGGAATGTGCTCTGAGCCTGCTCGTTGAGAGCCTGCAGCAGTCATCCCTGCACAGGAGATTCTTGGTCTCAGGATCATGGAAGGGCCCGCTGGAGGCATTTGATGTAGTTACTAACCAGAGCCCAGTTGATGGCCCTGGGCAGCCCCTCTCCCTGCCTAACCCCATGGTCTCTCATCTGCAG
Seq C2 exon
GCCTCACTGGAGCAGCTTCTGCAGGTCCTACACAGCACCACGCCCCACTACATTCGCTGCATCAAGCCCAACAGCCAGGGCCAGGCGCAGACCTTTCTCCAAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141140-MYO19:NM_001163735:19
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=NA C2=0.107
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCCCACCTGAGCTGACCA
R:
CTCTTGGAGAAAGGTCTGCGC
Band lengths:
254-1305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)