BtaINT0097863 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13166068-13167161:-
Coord C1 exon
chr19:13167009-13167161
Coord A exon
chr19:13166176-13167008
Coord C2 exon
chr19:13166068-13166175
Length
833 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
CCGCAGTCTCTCCTCTGCAGGCC
3' ss Score
8.23
Exon sequences
Seq C1 exon
GACCCCGTCCCCCCGGAGCTGACCAGCCTCCTGCAGCAGTCCCAGGACCCCCTGCTCAAGGTGCTCTTTCCTGCCGACCCCGAAGACAAGTCCCCTGAGGAGCCCTCCGGCCAGAACCGGGCCCCTGTGTTGACCGTGGTGTCCAAGTTCAAG
Seq A exon
GTGGGCCCAGCGGCGTTGACACCACGTGCTCGCTCATGAGTGTCCAGCGTTTACCGAGCACCTCTTGGGATCGGGGCTGTGCGCCCGGAGCACGGCGGAGGCCCGTAGCCGTGGTCCCGGTCTGCGGTAGAGACGGGAACCTGACAGATGAACTGGGGGTCTGTAGTTGACGTGACAGGAAGCCTCAGACCCGTGGGCGGCGGTGTGCCCTCTCGCCCACCGCTGACAGTCATCACAGCAGAGCAGTGGCTGCTGAACCTCCGTGGCGGCCGGCTGCCAGCTCCCTCACTTCCGGACAGACTGTCCTCGGGCCGTGTGCTGCTCTCGGCCCCGCCCCTGGGCCCTCCCCTCAGCTCTGCGTTACTCCCACCCTCGTGCCGCCCCTCTCGGTTTATTCCTTGTCCTGCTTCCAACCATTCTCTTCACCTCCCGGGACAGGGAAACACATCCCTGTCTAGCCTCAGACACGCTCCTGAGGGCCCGCCCCCTGTCTGCGAGGCCCTGCACTGTGAGGTGACGGCGGACAGCTGTGTCGTAGCCCCAGCACACAGTACGGGCTTAGTAATGACAGGAGTTGCCCGAATGAACGACAGGGGTTCTGAGAGGGTTCCCTTCTGGGAAGATTGCCCTGGTTGGTGTTGGGGGAGCCTGAGACTAGATGCAGGCAGATGGACCAGGTGGAGGGTCACAAGTCAAGAAGGGTCCCTGGGGGCATGCTCTGAGTATACCCAGTGAGGGCCACTGGGAGTCATCCGGGGTGTGTGAGGGTCATGGGCTCCGGGTTGCCCAGCTGATGCCGCCCCACAGCCTGAGCCGCAGTCTCTCCTCTGCAG
Seq C2 exon
GCCTCCCTGGAGCAGCTCCTGCAGGTCCTACATGGCACCACACCCCACTACATTCGCTGCATCAAGCCCAACAGCCAGGCCCAGGCACAGATATTCCACCGAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675:ENSBTAT00000064679:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCAGCCTCCTGCAGC
R:
TCTCGGTGGAATATCTGTGCCT
Band lengths:
239-1072
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]