MmuINT0104091 @ mm9
Intron Retention
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84714853-84715709:+
Coord C1 exon
chr11:84714853-84715005
Coord A exon
chr11:84715006-84715601
Coord C2 exon
chr11:84715602-84715709
Length
596 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CCAAATTTCTGTGTCTTCAGGCC
3' ss Score
7.24
Exon sequences
Seq C1 exon
GACCCTGTTCCCCCTGAGCTGACTGAGCTCCTGCAGCAATCCCAAGACCCCCTGCTCACGATGCTGTTTCCTGCCAACCCTGAAGAGAAGACCCAGGAGGAGCTGTCTGGCCAGAGCCGGGCTCCTGCATTGACTGTGGTGTCCAAGTTCAAG
Seq A exon
GTGGGTCTAGTGGTGCTGACGTGAAGTGCTCAATACAACTGTCTACTGAGCGCCCTTCAAAACTGGGGCTGCTTACTGGGGAGCAGTGATGTGCCGGGCAGAAATAGTCCCTGTCTCATCAAGCTTATGCTTCAGTGTAAAAGACAGGGGACAGACAAGACATGACTGGGTATGAGGATAAGGCATACGGTGGGGACTCCCAACCTCTGCTGATGAGCTGTGACATAAGCAACGTCTGAGTCACATCCCTCTGGCACATAGGGAAGGCTTAATAATGGAATAGCAGGGGTGGCGTGAAGCTATCTGTAGGAAAATGATCCTGAGGAAGAGAGGAAAGGGAAAAGCCCCAGACCAGAGGCTCAGTCAGTAAGAGCCACTGGTCCACAGCATTCCTGGAGAAAGGGTGAGAAGTAAGGGGTGGTTACCATGTGCTTTGCACATGTTCTTAAAAAACATGGAGTAGTCCCCAGGGTATATATGAGCCTGATCTCAAGGCTGGGAGGTCCTCCAAAGACACAACACACTCACAGCCAGCAGCCAGCTTAGGCCCCTGAGCTGCCCCAATCCTGCCTAACCCCAAATTTCTGTGTCTTCAG
Seq C2 exon
GCCTCACTGGAACAGCTCCTGCAGGTCCTACATAATACAACACCCCACTACATTCGCTGCATCAAGCCCAACAGCCAGAGTCAGCCACAGACTTTCCTCCAAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527-Myo19:NM_025414:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=NA C2=0.139
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCCCCCTGAGCTGACT
R:
TTCTTGGAGGAAAGTCTGTGGC
Band lengths:
254-850
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: