GgaINT0130574 @ galGal3
Intron Retention
Gene
ENSGALG00000005374 | MYO19
Description
NA
Coordinates
chr19:8085956-8086693:-
Coord C1 exon
chr19:8086547-8086693
Coord A exon
chr19:8086064-8086546
Coord C2 exon
chr19:8085956-8086063
Length
483 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
CCTGTATTTCTTCTCTGCAGAGT
3' ss Score
10.44
Exon sequences
Seq C1 exon
GACCCCATTCCACCAGAACTTGTGCATGTTCTGCAAAATTCTAAGGACACTTTGCTTCAAAAATTATTTCCTATTGCAGAAACCAACCAAAATAATACCAAAACGCAGAACAGAGCGGCTGTTGTTACAGTGGTGTCAAAGTTCAAG
Seq A exon
GTACATACACTACTCAAGATTCTGCTTTCTACTGCTGTCTTCATAACTAGATGAGAAAACATTATAGTTGGACCAAGATCAGTAACTGTTATAAAATGAAATGGCTGTAAACCTGAAATAGCATCAGGCTTTGATAATCTCTGGGTTTGGAGTTTTAACTCACTCAAGTTTTACCTTTAGCAACTGGGCATCTGCCTTTGTCAGGCTTTTTTGTATGTGCTCCCTCTTATCGATAGGTTAGCTCCAACTAATGGCCCTGATGCAGTTTTGGAAACTTTCTGAATTTACCATTGGTCATTTTAAAAAGTATCCATAGAGATATTAGCTGTGCTAATACTGAGAGTGTCAAGTCATTCTTGGGGAAAATAAATAAATAAATGAAGACCTTCGTTGCTTTTACAGAATAGCACCAATTCACTAAACTGCCTGTGGAGAAGGGAGCCCTAATTGCACCTGTATTTCTCCTGTATTTCTTCTCTGCAG
Seq C2 exon
AGTTCACTTGAAAATCTCATGCAGATCTTGAACAGCACCGAACCACATTACATCCGATGCATCAAGCCTAATGCTGACTGCCAGGCAATGACTTTTAGAAAAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374:ENSGALT00000039165:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCATTCCACCAGAACTTG
R:
CTCTTCTTTTCTAAAAGTCATTGCCT
Band lengths:
254-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]