RnoINT0096962 @ rn6
Intron Retention
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72218427-72219586:+
Coord C1 exon
chr10:72218427-72218579
Coord A exon
chr10:72218580-72219478
Coord C2 exon
chr10:72219479-72219586
Length
899 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CCAGATTCTTGTGTCTTCAGGCC
3' ss Score
6.77
Exon sequences
Seq C1 exon
GACCCTGTTCCCCCTGAGCTGACTGGGCTCCTGCAGCAATCCCAAGACCCCCTGCTCATGATGCTGTTTCCTGCTAACCCTGAAGAGAAGACCCAGGAGGAGCTGTCTGGCCAGAGCAGGGCTCCTGCATTGACTGTGGTGTCCAAGTTCAAG
Seq A exon
GTGGGTCTAGTGGTGCTGACATGAAGTGCTCCATACAATGGTCTACTGAGTGTTCCTCAGACTGGGGCTGTTTACTGGGGAGCAGTGATGTGCGATGCAGAAATGGTCCCTGTCTCATCAAGTTTATGCTTCAGTGTAAAAGACAGGGAACAGACAAGACATCACCGGGTGTAAGGATAAGGTCTAATGTGGCGACTCTCAGCCTCTGCTGATGGGGTAATCATAGGAGAGTAACACTATATGGAGCTGTGACTGCCCTGTTTAAACCCTGTGCTTGGCTAGACCAAACTACCACATCCCTTGGTTTATGTGGTCATGTGATAACATGTGAAACTTGTTCAAGCTGCTCACCTTCCTGGGGTTTCCTGACCACTGCCCTTCAACAGTGTTTTCACCTACCCTGTCCCTTTTTTCATTTCTTCTGTTCAAATGCTAGCCCCCACTATACTACCAAGTTTACTGTCTGATGAGCGTGCTACAGCCAGAGCCTCAGACACTACCAAGAGCTCCCACACAGCCTGTGTGTCATTAGGCTGAGCTAAGCGATGTCTGAGTCACATCCAGTTGGCACATGGAGCAGGCTTAATAATGGAACAGCAGGGGTGGTGTGAAGCTGTTCTGTAGGAAAATGATCCTGGGGAAGAGAGGACAGGGAAAGCCCCAGACCAGAGGCTAAGTCAGTAAGAGTCACTGGTCCAGAAGCATCCTTGATAAATAAAGGGTGTGAAGTAAGGGTGCTTTGCACACATTCTTTAAAAACTTCCAGTCATCACCAGGGTATATGTGAGCCTGATCTCAAGGCTGGGAGGGCCTCCAAAGATACAACACCATCACTAACTAGCATCTAGCTTAGGACCTTGAGCTGCCCCAGTCCTAACCCCAGATTCTTGTGTCTTCAG
Seq C2 exon
GCCTCACTGGAACAGCTCCTGCAGGTCCTGCATAAAACAACCCCCCACTACATTCGCTGCATCAAGCCCAACAGCCAGAGTCAGCCGCAGACTTTCCTCCAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852:ENSRNOT00000003886:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTTCCCCCTGAGCTGA
R:
TCCTGGAGGAAAGTCTGCGG
Band lengths:
254-1153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]