MmuINT0104091 @ mm10
Intron Retention
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84901351-84902207:+
Coord C1 exon
chr11:84901351-84901503
Coord A exon
chr11:84901504-84902099
Coord C2 exon
chr11:84902100-84902207
Length
596 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CCAAATTTCTGTGTCTTCAGGCC
3' ss Score
7.24
Exon sequences
Seq C1 exon
GACCCTGTTCCCCCTGAGCTGACTGAGCTCCTGCAGCAATCCCAAGACCCCCTGCTCACGATGCTGTTTCCTGCCAACCCTGAAGAGAAGACCCAGGAGGAGCTGTCTGGCCAGAGCCGGGCTCCTGCATTGACTGTGGTGTCCAAGTTCAAG
Seq A exon
GTGGGTCTAGTGGTGCTGACGTGAAGTGCTCAATACAACTGTCTACTGAGCGCCCTTCAAAACTGGGGCTGCTTACTGGGGAGCAGTGATGTGCCGGGCAGAAATAGTCCCTGTCTCATCAAGCTTATGCTTCAGTGTAAAAGACAGGGGACAGACAAGACATGACTGGGTATGAGGATAAGGCATACGGTGGGGACTCCCAACCTCTGCTGATGAGCTGTGACATAAGCAACGTCTGAGTCACATCCCTCTGGCACATAGGGAAGGCTTAATAATGGAATAGCAGGGGTGGCGTGAAGCTATCTGTAGGAAAATGATCCTGAGGAAGAGAGGAAAGGGAAAAGCCCCAGACCAGAGGCTCAGTCAGTAAGAGCCACTGGTCCACAGCATTCCTGGAGAAAGGGTGAGAAGTAAGGGGTGGTTACCATGTGCTTTGCACATGTTCTTAAAAAACATGGAGTAGTCCCCAGGGTATATATGAGCCTGATCTCAAGGCTGGGAGGTCCTCCAAAGACACAACACACTCACAGCCAGCAGCCAGCTTAGGCCCCTGAGCTGCCCCAATCCTGCCTAACCCCAAATTTCTGTGTCTTCAG
Seq C2 exon
GCCTCACTGGAACAGCTCCTGCAGGTCCTACATAATACAACACCCCACTACATTCGCTGCATCAAGCCCAACAGCCAGAGTCAGCCACAGACTTTCCTCCAAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527:ENSMUST00000093969:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=NA C2=0.120
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCCCCCTGAGCTGACT
R:
TTCTTGGAGGAAAGTCTGTGGC
Band lengths:
254-850
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types