HsaINT0116413 @ hg19
Intron Retention
Gene
ENSG00000162631 | NTNG1
Description
netrin G1 [Source:HGNC Symbol;Acc:23319]
Coordinates
chr1:107961202-107963765:+
Coord C1 exon
chr1:107961202-107961267
Coord A exon
chr1:107961268-107963705
Coord C2 exon
chr1:107963706-107963765
Length
2438 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
ATTCTTTTAAACCTATCCAGTTG
3' ss Score
5.17
Exon sequences
Seq C1 exon
ATCCTCCAAAGTTTAATAGGATATGGCCGAATATTTCTTCCCTTGAGGTTTCTAACCCAAAACAAG
Seq A exon
GTAGGAGCATGTAAAATTCCTACGGACATAAAATCCCACATGTTTGGGGGAAAATCCTATATGCCATTTTTAGCACAAAATAAGAGCATTATCATGAATGCTATGTCTTTGAAAGAATCATAATTCAATCTTTTTTTCTAATATGAAGAGTGTCCCAAAAATATTAGAGTGAAAGATGAAGGGGAAAATTAGATGGCATGGAAGTTAAAAAGCCCTTTACCAGATTACATTGAAGGTCAGTCAGTCCCAGGAGAAGCCTAGACTTCTGTTACCACCACAGTGTGGAGGACAAACAAGACTTAAAAATGTGTGAGTGGCACAGGCATCCTTTCAATGTCTTCCTCTTATTTTTAAGTCAACCAACTGGTACCTCAGTTGTACTGAGGGTCTGGGTAAATACATAGAGGTAGTATTGTGACACCTAACAGATCTGTTTTCGCTGACTATTGCTCCATATTGACTTGCAAAAATTTGGAGCAATCTGTCTCTTTCCCTTCCTCCTTTTTCCTGTCTTCCTCCCTCCCTTTAGCCTCTCTCACACACCCTTTCTCACTCCCTGTCTCCTCTCTCCCTCTCCCCGCTACCTCCTCCCTCCTCTCTCTCTCTCTCTCTCTGTCTTTCACATCACAGTAAATTTTCCTTGTTGGAACTTTTCCTTTTATCTTCTTTATCAATTAACATTCATGTGTTCCAGCATTTAGAGCAATCTGTTCTCTTTCTGTCCTTAGAGCAGTAATTATTTTCTGACTCCTAATGTCAAAGAAGAAAAAGAAAAAAGAAAAAAGAAAACAACACTGATAGACAGAAATGTGATTACGCAGGAAGAAAGAGAACTTTTAAAGGCTGAGCAATAAACTTCATAAGCTGCAGTGTAATGTTAAATTTATATTAACATCTAGCCTATAGATATATATAGTCATGTATAAATAGGAATTTATTTTAATATAGTATTGTATTATTTTGCCTTCTTCCTTCTTCAAAAAAAAAAAAAAGGCACATCTTTGGCTTCCACCTTCCTTAGCTATATACAGGATGTTCCTTTTAAACTCTAATGAATACAGATGGAAAAGGAAATGAGCAAAAGGAGGAACCAGGAAATAGCTGCTAAGCAAAACAAAATATATTAGTAATTTGTTGAGGAGTCAAATTGGAAGGGCTGCATTTTCAGTCCTTGATCAGAGTGATGAAATCTAGACTGTCCTAGATACATATATTACTAGCAAATAGAATTATCTTAATCATCTGCTCCAAATGAATTTTTTCAAGTTTCTGCATACATATATGAAAGAAGAAATACAGATCAAGCTTGCCCCTATTAGTATAATTCTAGGAGGATTCAGAAGAGGTTTAGTGGCTTTATTCCTTGGCAAGTTCAATGACAGCATCTTCAGTGAAATGTCACTCAGTATTTCCTATTGAATTTCATAGTTCACAAATTATACAACACAGGCTCTAAGACAACACTTCTCCACAGTGAGTTTTGAGCTGAACAAGATTATGCATTGTTCAAAACCTGAAATAGGCCCATTTAATTATTTTGCTGTGCTGTCTGTGAGAGTCACAGGACAAAACACTTTCAGAAATATCATTATGTAATACCAGTTGCACTTTCTTAGAATGTGGATAATGAGTTCAAATGAATCTATTGAGAAGCAGCACAGTTGAGCAAAGTTCTTAAATTCTGAAATTTTAGCGAAAGGTGCACTTTGTAGCAGAGGCCAGTTCTATGCAGCCATAATTTATCTTGTCAGCATCTGCAAAGAACATCAGGCTCTGTTCTGTTTTGGCTATTTTCACAAGCAACTCTTCATGAATAATTGGAAAAGAAATGGCAGGCAAACATAGAGAGAAATCTCTGCCATTAACAAGCTGATATCATCAAAAAGGTAACAAATGCTGAGAAGGCTACAACTTTTAAAGGTATATGTGTTCAAGATGACTCTGAGATAGGCCCAAATGCTGCTGAATGGCTGACTATTGGGACTGACTTATGTTCTAGGATGCCTAATTAGTTCAACAAAAATAGTCTAAATGGTGTATATGTCGAATAGTTTATCATGACACAGAATGTCATGGTGAACCCAGGCAATGATAATGTCAACTGACAAGACAACTCCTACTTTAAAAGATTGACAGTAGGGGATCCTACTATCCATATTGTTATGGTAACAATCCTTGCTTCACTGGATTCTTGATTTAAATGGTAATGATTTTTCCCTCTGAAAAGAAAACTTCTAAATTGTATTACTGACAATGTTGAACCATTTTCAGCCAAATACAAGCCTTACTTTGTGATTGAAACAAACTCCTAGAAACAACAGATACAAATAGTCTCTTAATTTAGGGCTACTTTTCAAGTGGGTTGGTGATAAGTTATTACAGTTTGAACGTTTCACTATTGTTTCTAATTTACTGTTCATTCTTTTAAACCTATCCAG
Seq C2 exon
TTGCTCCCAAATTAGCTTTGTCAACAGTTTCTTCTGTTCAAGTTGCAAACCACAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162631-NTNG1:NM_001113228:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)