MmuINT0111275 @ mm9
Intron Retention
Gene
ENSMUSG00000050836 | Ntng1
Description
netrin G1 [Source:MGI Symbol;Acc:MGI:1934028]
Coordinates
chr3:109642038-109644493:-
Coord C1 exon
chr3:109644428-109644493
Coord A exon
chr3:109642098-109644427
Coord C2 exon
chr3:109642038-109642097
Length
2330 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TGTTCATTTTTTTAAACCAGTTG
3' ss Score
6.35
Exon sequences
Seq C1 exon
CTCCTCCAAAGTTTAATAGGATATGGCCGAATATTTCTTCCCTTGAGGTTTCTAACCCAAAACAAG
Seq A exon
GTAGGAGCATCTAAAATTCCTACTGATATAAAAATCCCATGTTTGGGGGGAAAATCCTATATACCATCTTAACACGAACTAGAACATTACCACGGATGCTTTGTCTTTGAATGAATCCTAATTTGAATCTTTATTTTTTCTAATATGAATATAGTCCCAGAAATACTGGAGTGAAAGAGGACTGAGGGGAAAATCAGATGGAACAGGATTTATAAGTCTTGAAAAAATGTACTTTTGTAGAGTCTCAAGAAAAGCCTAGAGTTTAGTTGTCAACATAGCATGGATATAAATCTTAAAAAACGTGTGGACACTACAAACTCCTTCCTTCCCTTTTGCTCTTCTTAAGTAAACTCACTGGTTGCCTCCACTGTTCTGAGGATCAAGATGAACATATAAGGGCATCACTGAAACTCCCAGAGCGTCTGTTTACTATTATTCCATATCAACTTGCAAAATTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTTGCTCTCTCTCTTGCTCTCTCACTCGCTCTCTCTCTCTCCCTCCCTCTATCCTGCCCTCCCTTTCTCTCTCTACTTCTGCCTCTGCCTCTCTTTTCTTTCTTTTTCATATATCTATATCGATGCATGATGCATGTATACACATCCTAAAACATTCTCTTGTTGGAATTATCTTTCCATCCCATTTACCAAGGAACATTCACGTTTACCAGCTTAGAAAAAAAAATCCTGGTCTGTTCTCAGAACAGTAATTATTTTATGGCTTCTGGTGTCAGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAATGAAGAAAGGAAGGAACTAGAAGCAGAAGGAAAGAGGAAGAGTGGAAACTAGCAGTAGGATTACATAGGAAGAAATAGAATTATTAAAATGGATCATAAAGTTGTGAAGCTGAAATTTTAGATTAACGTTAAATTCACACCAAGACCTTCCTATATGTACATGTGTTTGTATATAAACAGGAGCTTATCTCAATAGAAAGCAGTGTTCTTTTTTGCCTTCTTTCTCCAAAAATAAAACATTCATCACTGACTTCTGCCTTCTTTAGTTATAGACAGGATGTTCCTTTTGAACTCTAATGAATACAGATGGAGGAGGAAATGAGCAAAAGGAGGAACCAGGAAATAGCTACTAAGCAAAACAAAATATATTAGCAATTTGTTGAGGAGTCAAATTGGAAGGGCTGCATTTTCAGTCCACTATTGGAGTGATGAAATCGAGACTGTCCTAGATACATACATTACTAGCAAATAGAATTACCTTAATCATTTGCTCTAAATGGATTTCTCCAAGTTTCTGGGTACATACATGGAAGAAGAAATACAGTTCAAGTTTATTCCTGCTAATAGCATTCCCCGAGGAGCTGCAGGGTGAGGGGAGAAAAGGTTAGTCTTATTCCTTGGCAAGTTCAGTGGGAGCACCTTTGAATGGCACACAGTTTTTCCCACTGAATTCAGTACTATGACAAACATACAAGAAAAGACCTCAGGCTTAACACTTCTCCACGGCGAGTTTTGATCTGAATAAGATTATGCTTTGTTCAAATCATGAAATGAACCCATTTGATTATTCTGCTGGTTTTGGTGTCATGGGATTAAAGCTTTCAGAAACAGCATTAGAGAAGGCCAATTGTACATTTTTTTTTAGGATGTGGATAAGGGGCTCAAATTAAGCTACTTAAAAATGTAACACAGCTGGATTAAGTGCTTAAACTCAAAATACTAATGCCAGGTAAAATGTCTGGTGGAGGACAGTTCTGTGGAACGATAATTTATCTTGCCAACATCAGCAAAGACCCCCAGACCTTATTCTGTTTTTGTTACTTGCACAAGAAACTCATCATAAATCGGTGGAAAAGAAACAGCAGACTAGTTTAGAAGGACAATCCTGTCATTAACAAAGGACAGCAACACTGAGGCAATACACAGTGGGACAGGAAACACAATTCTTAGAGGGACCCATATTCACATGACTTGGAGGTCAAATGCTGCCGAAAGCTTGACCGTATGACTATATTCTGAGATCTCTAGTAGGTTCAGCAACAACAACAAATGGTCTAGCTGGTTCATATATAGACACATTTATACCTCTAAAAACAAAAGCTTTATTACTAATGACAGTGTTGAAACATTTGCAGCCAAATAGGAACTTTCCTTTGTAATTGCAACAGATTTCCAGGAAAAGAAAAAAAAAAAAGATAAGAACATTCTCTTCATCAGGGCTCCACAGAGTGGGTTGGTAATAAGGTATTAATTACAGTTTGAACGTTTCACTATTGTCTCTAATTTGCTGTTCATTTTTTTAAACCAG
Seq C2 exon
TTGCTCCCAAATTAGCTTTGTCAACAGTTTCTTCTGTTCAAGTTGCAAACCACAAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050836-Ntng1:NM_001163350:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: