HsaINT0130256 @ hg19
Intron Retention
Gene
ENSG00000138398 | PPIG
Description
peptidylprolyl isomerase G (cyclophilin G) [Source:HGNC Symbol;Acc:14650]
Coordinates
chr2:170492602-170494254:+
Coord C1 exon
chr2:170492602-170492738
Coord A exon
chr2:170492739-170492922
Coord C2 exon
chr2:170492923-170494254
Length
184 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGA
5' ss Score
5.17
3' ss Seq
TTCTTTTTCTTATTTTTTAGGAG
3' ss Score
11.87
Exon sequences
Seq C1 exon
CGTTATCGAACTCCTTCCAGATCCAGATCAAGGGATCGTTTCAGACGTAGTGAGACTCCTCCACATTGGAGGCAAGAGATGCAGAGAGCTCAAAGAATGAGGGTATCAAGTGGTGAAAGATGGATCAAGGGGGATAA
Seq A exon
GTAAGATTTAACTATTATTATTTCAAATGTAATGATAAGTGTTTGCTTTTACTATTATACATAAAGTTATTGTCATTTTAGTTATTGCTGAATACCTTAAGAAAAGTAGAATATCATTTTAGCTAATAATATCTACAGTTCTTTTCCTAATAACATTTCCCCAATTCTTTTTCTTATTTTTTAG
Seq C2 exon
GAGTGAGTTGAATGAAATAAAAGAAAATCAGAGAAGTCCAGTTAGAGTAAAAGAGAGAAAAATAACAGATCACAGGAATGTATCTGAGAGTCCAAACAGAAAAAATGAAAAGGAGAAGAAAGTTAAAGACCATAAATCTAACAGCAAAGAGAGAGACATCAGAAGAAATTCAGAAAAAGATGACAAGTATAAAAACAAAGTGAAGAAAAGGGCCAAATCTAAAAGTAGGAGTAAGAGCAAAGAGAAATCAAAGAGTAAAGAAAGAGATTCAAAACATAATAGAAATGAAGAAAAGAGGATGAGGTCAAGGAGTAAAGGAAGGGATCATGAAAATGTTAAAGAAAAAGAAAAGCAGTCTGATTCTAAAGGAAAAGATCAGGAAAGGAGTAGAAGTAAAGAGAAGTCTAAACAGTTAGAATCAAAGAGTAATGAGCATGATCACAGTAAAAGTAAGGAAAAGGATAGACGCGCACAATCCAGGAGTAGAGAATGTGATATAACTAAAGGTAAACACAGTTATAATAGCAGAACAAGAGAACGAAGCAGAAGTAGGGACAGAAGCAGAAGAGTGCGATCAAGAACCCATGACAGAGATCGCAGCAGAAGCAAGGAGTACCATAGATACAGAGAACAGGAATACAGGAGAAGAGGACGGTCACGAAGCCGAGAGAGAAGAACACCACCAGGAAGATCAAGAAGTAAAGATAGGAGGAGAAGGAGGAGAGACTCACGGAGCTCAGAGAGAGAAGAAAGTCAAAGCAGAAACAAAGACAAATACAGAAACCAAGAGAGTAAGAGCTCACACAGAAAAGAAAATTCTGAGAGTGAGAAAAGAATGTACTCTAAAAGTCGTGATCATAATAGCTCAAATAACAGCAGGGAAAAAAAGGCTGATAGAGATCAAAGTCCCTTCTCAAAAATAAAACAAAGCAGTCAGGACAATGAATTAAAGTCCTCCATGTTGAAAAATAAGGAGGATGAGAAGATCAGATCCTCAGTGGAAAAAGAAAACCAAAAATCAAAAGGTCAAGAAAATGACCATGTACATGAAAAAAATAAAAAATTTGATCATGAATCAAGCCCTGGAACAGATGAAGACAAAAGCGGATGAGTGAGTTATATAAACTTACTTCCATTCTGTTTCGGATTTTAAGTTTGAGAGACTTGCTAATGAATCTCCTTTATGTTGTTTTCCTTTTCATTGTTTTTGGATTGTTTTATGTTTGTCCTTTTTTTTCTTAATGTGGATTTCATTGAGTTGATTTTTTGATAATCTGCAATCTGGATAATTTGTACTGCTAAAGTTTTAATAAACTCGACATGAGAAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138398-PPIG:NM_004792:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAAGATGGATCAAGGGGG
R:
TTGGCCCTTTTCTTCACTTTGT
Band lengths:
242-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)