BtaINT0116216 @ bosTau6
Intron Retention
Gene
ENSBTAG00000027789 | PPIG
Description
Bos taurus peptidylprolyl isomerase G (cyclophilin G) (PPIG), mRNA. [Source:RefSeq mRNA;Acc:NM_001109807]
Coordinates
chr2:26695352-26696967:-
Coord C1 exon
chr2:26696831-26696967
Coord A exon
chr2:26696668-26696830
Coord C2 exon
chr2:26695352-26696667
Length
163 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGA
5' ss Score
5.17
3' ss Seq
TTTTTTTCTTCATTTTTTAGGAG
3' ss Score
11.99
Exon sequences
Seq C1 exon
CGTTATCGAACTCCTTCTAGATCCAGATCAAGGGATCGTTTCAGACGTAGTGAGACTCCTCCACATTGGAGGCAGGAGATGCAGAGAGCTCAAAGAATGAGAGTATCAAGTGGTGAAAGATGGATTAAAGGGGATAA
Seq A exon
GTAAGATTTAACTCTTATTACAAATGTGGTAATAAGTATTTTTTTAACTATTTTAAATTATTTTATTTAGAGTCATTTCAGTTGTTTCTGAAAATCTTAAGGAAAATAGAATATCATTTCAGCTAATAAAGTCTCCCAAAAACTTTTTTTCTTCATTTTTTAG
Seq C2 exon
GAGTGAGTTAAATGAAATAAAAGAAAATCAAAGAAGCCCAGTTAGAGTAAAAGAGAAAAAAATAACTGATCATAGGCATGTGTCTGAGAGTCCAAACAGGAAAAGTGAAAAGGAAAAGAAAGTTAAAGACCATAAATCTAACAGCAAAGAAAGAGAAATCAGAAGAAATTCAGAAAAAGATGATAAATATAAGAACAAGGTAAAGAAAAGGGCCAAATCAAAAAGTAGGAGTAAGAGCAAAGAAAAATCCAAAAGTAAGGAAAGAGACACAAAGCATAATAGACATGAAGAAAAGAGGATGAAGTCAAGGAGTAAAGAAAGGGATCATGAGAATGTTAAAGAAAAAGAAAAACCTGATTCTAAAGGAAAAGAACAGGAAAGGAGTAGAAGTAAAGAGAAATCTAAACAGTTAGAATCCAAAAACAATGAGCATGATCATAATAAAAGTAAGGACAAAGACAGACGTGCACAGTCTAGGAGTAGAGAACGTGATATGACTAAAAGCAAACACAGTTACAACAGTAGAACAAAGGAGCGAAGCAGAAGTAGGGACAGGAGCAGAAGAGTGCGCTCCAGAAGCCATGACCGAGACCGCAGCAGAAGCAAGGAGCATCATAAATACAGAGAACAGGAGTACAGGAGAAGAGGAAGGTCACGGAGCCGAGAGAGAAGAGCGACGCCAGGAAGATCAAGAAGTAAAGATAGGAGGAGGAGGAGGAGAGATTCACGGAGCTCGGAGAGAGAAGAAAGTCAAAGCAGAAACAAGGAAAAATACAGAAACCAAGAAAGTAGAAGTTCACACAGAAAAGAGAATTCTGAGGGTGAGAAGAGAATGTACTCTAAAAATCGTGATCATAGTAGTTCAAATAGTAATAGGGAAAAAAAGGCAGATAGAGATCAAAGTCCATTCTCAAAAGTGAAACAAAGTAGTCAGGACAATGAATTAAAGTTCTCCACTTTGAAAAATAAGGAGGATGAGAAGACCAGATCCTCAGTGGAAAAAGAAAACCAAAAATCAAAGGGTCAAGAAAATGACCACACACATGATAAAAATAAAAAATTTGATCATGAATCAAGCCCTGGAACAGATGAAGACAAAAGTGGATGAGTGAGTTATATAAACTTCTTATGTCCATTCTGTCTCAGATTTTAAGTTTTAGAGACTTGGTGATGATCTTCCTTATGTTGTTTTTTTCTTTTCATTGTTTTGGGGTTGTTTGTCTTTTTTTTTTCCAATGTGGACTTTTTGAGTTGATCTTTTGATAATCTGCAGCCTGGATAATTTGTACTGCTAAAGTTTTAATAAACTTGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027789:ENSBTAT00000040072:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACATTGGAGGCAGGAGAT
R:
TCTTCTGATTTCTCTTTCTTTGCTGT
Band lengths:
244-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]