MmuINT0124736 @ mm9
Intron Retention
Gene
ENSMUSG00000042133 | Ppig
Description
peptidyl-prolyl isomerase G (cyclophilin G) [Source:MGI Symbol;Acc:MGI:2445173]
Coordinates
chr2:69587018-69592116:+
Coord C1 exon
chr2:69587018-69587154
Coord A exon
chr2:69587155-69587328
Coord C2 exon
chr2:69587329-69592116
Length
174 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGA
5' ss Score
5.17
3' ss Seq
TTTCTTCCTTTACTTTTTAGGAG
3' ss Score
11.32
Exon sequences
Seq C1 exon
CGTTATCGAACTCCTTCCAGATCCAGATCGAGGGATCGATTCAGACGAAGTGAGACTCCTCCACATTGGAGACAAGAGATGCAGAGAGCTCAGAGAATGAGGGTGTCAAGTGGTGAAAGATGGATCAAAGGGGATAA
Seq A exon
GTAAGATTTGTTATTTAAATGTGTGATGCTTTTTTACTGCTGAGCACAATGATTTTATTAGGAGCCAGTTTATTTCTGTATACCTTAGAGAAAACACAGTAGCATTATAGCTTATAATTATGCTGTTCTTTTTCTAATAATAATTCCAAATATCTTTCTTCCTTTACTTTTTAG
Seq C2 exon
GAGTGAGTTAAATGAAATAAAAGAAAATCAAAGGAGCCCAGTTAGAGTAAAAGAGAAAAAAATAACAGATCACAGACACATGTCTGAGAGTCCAAACAGAAAAGTAGAAAAGGAAAAGAAAGCTAAAGACCATAAATCTGAAAGCAAAGAGAGAGACATCAGAAGAAATTCAGAAAAAGATGATAAATATAACAAAAACAAAGTGAAGAAAAGGGGCAAATCCAAGAGTAGGAGCAAGAGCAAGGAGAGATCCAAGAGTAAGGAGCGAGACTCGAAGCACAGCAGACACGAAGACAAGAGGGTGAGGTCAAGAAGTAAAGAAAGGGATCATGAGACTACTAAAGAAAAAGAAAAACCACTGGATCCTAAAGGGAAAGATCAGGAAAGGAGTAGAAGCAAAGAGAACTCCAAACAGGTAGAATCAAAAAGTAATGAACATGATCATAGCAAAAGTAAAGAAAAGGATAGACGTGCACAGTCCAGGAGTAGAGAACGGGATCTGACTAAAAGTAAACACAGTTACAACAGTAGAACAAGGGAGCGGAGCAGAAGTAGGGACAGGAGCAGAAGAGTGCGGTCCAGAAGCCACGACAGAGATCGCAGCAGAAGCAAGGAGTACCATAGATACAGAGAACAGGAGTATAGGAGAAGAGGAAGGTCACGAAGCCGGGATCGAAGAACGCCAGGACGATCGAGAAGTAAAGATAGGAGGAGAAGAAGGAGGGATTCCCGGAGCTCAGAGAGAGAAGAAAGTCAAAGTAGAAACAAAGATAAATATAGAAGCCAAGAAAGTAAGAGTTCACACAGAAAAGAAAATTCTGAGGGTGAGAAAAGAACGTACTCTAAAAGTCGTGATCATAATAGCTCAAGTAATAACAGGGAAAAAAAGGCTGATAGAGAGCAAAGTCCAGTGTCAAAAACAAAGCAAAGCAGTCAGGACAATGAAGTGAAGTCCTCCACATTAAAAAATCAAGAGGACGAAAAGACCAGATCCCCGGTGGAAAAAGAAAACCAAAAATCAAAGGGTCAAGAAAATGACCATGTACATGACAAAAATAAAAAATGTGATCATGAATCAAGCCCTGGAACAGATGAAGACAAAAGTGGATGAGTGAGTTGTGTACTCTTAATTCCTTCCTGTCTCAAATTTTCAGTTTTTAAGACTTACTGTTGAACCTCCCTTTTTTATTGTTTTCATTGTTTTGGAGTTGTTTATGTTTGTCTCCCCCCACCCCCTTTTTTTTTTTAAATGTGGACTTCATTGAGTTGATCTTTTGATAATCTGCTACCTGGATAATTTGTACTGCTAAAGTTTTAATAAACTTGAAATGAAAAGAAAAACAACACTTTGGTGTAATACTGTGTGCTATGTTAAATTCTTATGTATTCATTTTTGTGTTGCAACCGTCAATAGCAGCCTACTTTGCTTAATCAGCCATTTGGAAACAAGCTTAACTGTTGGTTGCAGTACATTGTTGTATAGGCTTGTGTTTCTTTTGATACAAATCCCTTTAGAAACCACTTGAAGTTTTGTATAGCTTTTTGGGCTTTGATTTTTCATTTATAATTCATGGGCTTAGAGCAGTTTCCTTAACTAACAGAAGCAGGATCCTTATGTGATCTTAAACCTTCATTTGATTTTACAGTTATTTGTACTTTAGTTACTTTTTTTGTGCTTTATACCTTATACTTTACAATTCCAGCTGTAGCTTGTTTCTTAATATTGTCCACGTTGCTCTGCGAGCTATAAAAATGAGGTGAGTGCTGTTTTCAGTTCATGTGCTGATTGAGCTTGAGTTGCTGTTATACAGCATTTGACAGAAATTAGACCTTGGAAGACCAGACTGTAATTTTCAATTCTTTGTTGCTTTTGGTGTGAAGAGCTGAAATTGTTGCTTTTTAAGAACATGTTATTACCTTTTTCTACAATTTAAAAAATGCATTTCTCATTAAAACATACTACTTGTGTAGATCCTTCTTAAGCTAGACAGATTCTAAAAAGCGTTAGTATTGGAAATAAGATTTCCCTATTTTGGCTATTAGCCTATATCACATTGAGTGGTAATTCTGCATGATTTGGGTTTGTTTTTTGTTTTTTTTTTTTTAAACTTGGACTAACTTCTCTGATTCTCATAGCTGTGAATATGAAATGTCAAGAAGATGCATCTTTCTATATATGTACCATGATAGGCTGTGTAGCATGTTTGTGACTCTGGTTTCTTTCTATTCAGATGGCTTTAGACCAGTTTACTGTTAACATTATTTTAACTTGGCATGTATAACATTGCCATATAAAGTAGAATAGAAAGTTGCAAAATATGATACCGTGCAGAGTTAAACACTAAACATATCCAAAGTCCATTCAGAATTTTGTGTGTTGTATTTTGCTATTTTTTTGTGATGTGTGGCCTTTTATTCTGTAATATCCTTCTAAATAAAACATTGAACATCCAGCAAACACAAAACCTGCCTCATTTGAGAAATATTTCAAAAATCCAATTAATAGTAGCCTTTAGGACGTTTTTGTACTCTAATATTTGTCAGTATAGTGTCAGCTCTTACCAAGGTAGCTTCTTGGTAAACCCACTAGCTTTTCAATGATATTTGTACTGAATAAAGTGATGCTTAATATACTTCCCATTATTGATTACTATGGTAAGATATATTTGGCATTGTAGCTGGTACAGAATGAAGAGTGCAGTGATTATAAAGCTATTTGGAACATCCTAAAGCAAATACCCACAATGGATTCTTTACAAATAGTTTTTCTTGATGGGAATAGTTAATATATACGTGATCTGTTACATGTCTTAAAAAGTTGATTATGTCTTAAATTCAGTTGTGTTTTAAAATATATCCCAAACTACCTGATCTTTAAGAAAGGAATTTCAACAAACATTTTAAAATCCATACTTTTTTTAAGTAAAATTACTTTTTTTTTCTTATCTAGAGCTTTTACTTGTTAGCATATACATTATAAACAAGAACTTTCCAGTTCTTTAGGAAAGTAAACATGGGAGAAAATTGGTAATGTCTGTAATATCCTCCAAGAGAGCAGCTCAGAGCTGAGCATTTACGGGCTCCCCCAACTCCTGCTTTGTTAGTTTGTTATTTTTTTCAATATGACAGATAATGGGGTAAATAGTTGAGAAAAGACAATCTAGATTTTTTTTTCAGAATAAATAATTAACAGCATTAATTGTACCCCAAGATTCACAGTTATCAATTGCACAAAGCCCAAATTCTTGTTCTAGTAGATTTTTAGTTATTTGTACATCATATTCCCAAAACTATTTCCCATTTCAATTTTCCCATCACATTGGCTTTCTAAGAATATCTAAATTTACAGCTAATGAATAGTTTTTAATACCCCTTGAAAGTACTTTCACTTGTTTTTATTGCTTGACTCCAAAGCTGAGGAAATTATTTCAGTATGTAAGACTTTGATGATTATTGTATGAATTATTGTTCTGGATAAGTTGTTTACCACAGAAATTGACACTACAAAGAGATCGTTAGAGAAAGTAAAGCTACTGTATTGTACTGCATTGTAGCTGATACAGAATGGTTACTTGCTGTAAAGACAAGACTGTCTGGGAACAGCTATCCAACGTTTAAAGTGCTCTTTCACTTAAAAGTTATGCTAATCTGCTAGCTTTCTTTGCCCCAGTGTGATCCAGCTGCTCACTGGCTTTGCTTGCATCCAGTGGTAGGTGTCAAACCAAGAACCTTTATGTTCTGGATAGGCACATGCTGGGGTTCTGGTATTTTGGGTAATAGTATTAACTACTGCTCCTACTTTATTTTCTAGTGACTACTTAGAGCAGTTAGTATAATTGATCCTTTGTTCCATGTGTTAATAGCTTTCATCATGGAACCTTTTACAGCAAATTTCTGTAAATTTCCCAGAAAGGACTTAGACTTAACTGATTGGTATAAAAAACTAAATGAGCATTTTTCATTCTTTTGTTTCTATTTACTGTAATTATTCCCTGTAGGGTTTATGCATTTACAGTTGACAAACTCTCTGTGTAGTTTGAGAAACTTTAATTGTAAGAATATATTTTTAAACTAATTGTTTTTAAAAATAAAGTATCCCAAGGAAACTGAGTGTTGATTGCCATTACTGCCTGCAGTGGGCTTCTCAATGTCTTGAAGGGATTCACCTGCTGTGTGACAAATAAACAACAAATCACATTCATTTAAAAAAAAAAAAAAGGCCGCACAGGCCAAAGAGGAAGAAGTGTTAAGGTTTTACTCATTTGCTCTCCCTGACTCACCCCTAGTACTGGAGGATGGAAGGGCATTCATTGGTTTGTATTTCTGTCTGGTTTTGGTTTTCTTTTATAGACAATTCCATGTTACTAAAAGCACATTCTCTGTATTTCTGCCCCACCCTCTTTGTGTGTTTATAGTATTTTTGAAAGATTGACACATAAATTGGGTATTTCTATGGAATCTTGAGGTGTGGCTGCTCTCTGTGGAAGGGGAAAGCATAATTAGGTTAATGCACTTCTTTTCCTAGCTCCACAGTCACTGTGATGTATATTTTTTTAATGGAATTTAGAAAACTTGTTTTCTCAATTGTAAAATTAGTTTAAAGATGCTGCTTCTCTTATCATTAGTCTAGTAAATGTTGAACTGTTTTCTGCAGATGGCATTTTACAAAATTTAAACTTCAAAACTGTATTAACTTTTATAGTTAAACATTGTATTAAATAAAGTATACTACAATAAACAATTTGGGATTGTGCTTTTTATTTGTCTTATTAAAAATTAGGTAACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042133-Ppig:NM_001081086:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAAGATGGATCAAAGGGGA
R:
CCTACTCTTGGATTTGCCCCT
Band lengths:
258-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: