DreINT0118156 @ danRer10
Intron Retention
Gene
ENSDARG00000044431 | ppig
Description
peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
Coordinates
chr6:3545025-3547566:+
Coord C1 exon
chr6:3545025-3545176
Coord A exon
chr6:3545177-3546235
Coord C2 exon
chr6:3546236-3547566
Length
1059 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
TATGTGTTTTTACATTTCAGAGG
3' ss Score
8.68
Exon sequences
Seq C1 exon
CGCTATCGGACACCGTCTCGATCCCGCTCGCGGTCCTGGGATCGGTTTCGCCGCAGTGAGACTCCTCCACACTGGAGGCATGAAATGCAAAGAACACAGAAAGCTAAAGCCAATTTAGCTGCTTCCCAGGAGCGGTGGATTAAAGGAGACAA
Seq A exon
GTATGTCCAATTTGACATTACATGCAGATATTATGTCCAGTATTGTGTAGTGAAGATTGCACCAATTTAAAAAGTATCCTAATATGTCCCTTTTTTTTTTAACTAAATGTGATATCAATCTCAGCTGTCCATAGATGGACTGTAGTAGACTAGTTCAAAAGGGTACCAATGGCGTGGTGCATGACAAAGTTTTAATCGACATCATTCTTGCACGAGGAAATGTCAAAGTAAAGCTGTACGGGTCGTTCACATATCATATGAGCAGCACTTCTCACAAAACAGATGCTTTATACACAAATACTGGTGCATAAATGTTCATTACTAACCTTTCTATGAACATGATTTGATCTTAACTGCAGATTAATGATAGTGTGAAATAGCCTACTATAATGTCTGCAGTTATATAAAAAAAATAAAATAAATGCAACGTATATGAACACAAACAGACCCTTACAGACTCTGATATGTAACTAATTACAGAAAAACTACACACAGCAGACATTTAGTCCTTATTTGGGTTCAAAAGCAACGCAACAGATAGCCAACAGTCAGTGCAGACCTCTCATCAATATCTTTAATGTTCACCAGCACATGTAGCCTCTGTTAGAAAGTAATTCCGTTATTTTCAGTTCATAATAGTCCATAGAATAACTCTCTAACAGAGGCTACATGTGCTGGTGAAGGTTAAAGATAAAGATAGAGACTGTGGGCTATATATTGCGTGTTGTGAACATTTATACTGTACTTATGTTTATAAAGCATCTGTTTTGTGAGGAGTGCTTCTCATATGAAATGTGAAAGACCCGTACAGCTTTACTTGGACATTTCCTTAGGGTGAATGACGTTGACTGAAACTGACTGTTGACTGAAACCAAAAGGGTACCATAGCAGTGGGAGCGCAAACCTGATAAAGGTGACCCGTATTGTACCGCTCAGTGAAAATTAGCCATTTGGCATTGGAAATCGTACCACTCAGTGGAAACAAGCCATCAGAAAATGCACTTTAAATGTATTTTTCCCTACTCAGTTAAACATTTAATATGTGTTTTTACATTTCAG
Seq C2 exon
AGGAGATATGTCAGAGGAAAAGACGAAAACTACTGAGCTAAGCAGCGTCAACAAGGCTAGGGGAGACAAGCAAGACACAGCAAGGAAGAACTCTGAGCAAGAAAAGAAAGTTTCAAAGCGGGACAAATCACGCAGTCCCTCCAAAGGAAGAGACCGAAAGAGAGACAAACATCGCTCCAAAAGCCGAGAAAGGGACGCTCGGAAAAAGCCAGACGCCGATGCGGAGAAGAAGAAATCTCGCAGCCGGAGCAAAAGCAAAGACAAGAAGAGGGAGAAAGAAAAGAGCAAGAAGCCTGATGACAAGCGAGGACGCTCGACTAGCAAAGAAAAAGACAGAAAGGAGAAAAATGATAAAGAGGTCGAACAGAAAGACCGAAGCAAAGAAAGAGCCAAAGACGGAGAAAAGGAGAAATCGAAGGAGGTGGAAAAGAAGAAGAACGGAGAACGAGAGCGATCCAGAAGCAAAGAAAAGGGTCGCGATGTTTCACGGAGATCCCGATCGAGAGGACGCGGACAACGGGGACAATCACGAGACAGAGGCCGCGACAGACGACACAGCAGCAGCCGAGACCGAAAAACATCCCGCCGCTCACGAAGCAGAGAGCGAGCTCGAGGCAGAGACGCAGAAGACCGGAGGAAGAGTGCAGACAATAAAAGCAGAGAAACACGAGGACGAGACCGCAGCTCCAAAGAACGCTCCTCTCAGAAACAGCGCAGCCGAGAGCGAGAGGATCGACAGAAGAGGAGGAAAGACAAGAGCGACACGGGAAGCAGCGACTCTGACAACGATAAACGCAAGAAAAGAAAAACAAGCGACAGCCCCAAATCGAAAGAGAGAGCTAAGGACAAATCGAAAAGCCCGAGAAAGGATGCAAAGAAAAAGGACTCCTCTTCTAGCGACAGCGACTGAGAATCAATGCTTTTATTTACGTTTGTTTTCCCGCCACACAAACATCAGAGATTTACAACCATACCAAGAGACTGATTTTAGTCTTCAACTCTGCTAGACATGGCCTGATCCTCAACGTCTGGAGTATTTTTTAAAGATTGATAGACACAAATTGGTTTGGAATGAATCTGCTGTTGTATTTGTTCGGCTTTTATCTCGTCTTCTGTCATGTTCTTGATCCCTACACCACATAAACGTTTAGTGAGTCCCTTGGTTAAAACAATGGTTACTTTTTGTTTGTTTCATCTGAGCTGAGCTGTTTTTTAAAAGGGGTTGGTCGGGGTCATGTTTGCGTACCTTGGAGTTTTGTAAGGGCTTTATGTTTGTAAAGAGATCACCATGTTGGGTTCGGCTGAATTTGACAAATAAAAAATTGATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044431:ENSDART00000065256:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGACTCCTCCACACTGG
R:
CCGGCTGCGAGATTTCTTCTT
Band lengths:
345-1404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]