GgaINT0048379 @ galGal3
Intron Retention
Gene
ENSGALG00000009839 | PPIG
Description
NA
Coordinates
chr7:20079797-20081341:-
Coord C1 exon
chr7:20081205-20081341
Coord A exon
chr7:20080896-20081204
Coord C2 exon
chr7:20079797-20080895
Length
309 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
TATATTTTTTTTTTCTCAAGGAG
3' ss Score
7.35
Exon sequences
Seq C1 exon
CGTTACCGGACTCCTTCCAGATCCAGGTCAAGAGATCGATTCCGACGCAGTGAAACTCCTCCACATTGGAGGCAAGAAATGCAAAGAGCTCAAAGAATGAGAGTGTCTAGTGGAGAAAGATGGATAAAAGGAGACAA
Seq A exon
GTAAGATGATTTCTGTTCGGTGTATGTGCATATAAATTTTTGTACATATTAAAAGTAATACATATTTTCTTCAATTTTCAGTTATAGCTAATTCCAGGAAAACAAGACACACTGACTTAGTTATCCCACTGCTTAACTATCAGACTTTAATCAGGCTCACTTGTGGCTACCATAAAAATGTAATTATTATTACGAATCACGTAATGTGAGGCTGCTACAGTTGTGAGGCAGCCTCACTCCTGACTTCATTTTTTCGGACTGGAGGAGATTCAAATTATTTATTTCTTTTTATATTTTTTTTTTCTCAAG
Seq C2 exon
GAGCGAAATAAATGAAATCAGGAAAGATAATCAGAAAAGCCCAGGAAGAGGAAGGGAGAGAAAAGCATCAGACCACAGACAAGTTTCTGAAAGTCCAAGCAGAAGAGGGGAAAAAGAGAAGAAAAAAGATCATAAATCCAGCAGTAAAGACAGGGAGACGAGAAGAAATTTGGAAAAAGATGACAAGCATAATAGAAGCAAGACCAAGAAAAGAGGTAAATCTAGAAGCCATAGTAAAAGCAGGGAGAAATCAAGAAGTAAAGAAAGAGACTCCAAACACAGCAGACATGATGAGAAGAGAAGATCAAGAAGCAAAGAGAGGGACCGTGAGAAAGATAGAGAAAAAGAAAAGCACTATGATTCTAGAGGGAGAGATAAAGAAAGAAGTAGGAGTAAAGAGAGAAGCAGAAGGGCAGGTTCAAGAAGTAATGAACGTGACCATAGGAAGAGTAAAGACAGGGAGAAACATAAGTCAAGAAGCAGAGAGCGTGAGCATGCTAGAGGCAAACATAGTTCCAGCAGTAGAACAAGGGAACGAAGCAAAAGCAGAGATAGGGGTAGAAGAGGTAGATCAAGAAGCAGAGACAGAGATCGCAGTCGAAGTAAAGAATATTCAAGGAACAGGGATAGAGAATCAAGAAGAAGACGATCAAGAAGCAGAGAAAGGAGAGGTACACCAGATAGATACAGAGGAAGAGAAAATAGGAGGAGGAGAAACTCAAGGAGCTCGGAGAGAGAGGAAAGTCAAAGCAGAAACAGAGAAAGATACTCAAATAGGGAAAGTAGAAGCTCATATAAGAGGAATGATAGTGAAAGCCAAAGGAAGAGGCATTCAAAAAGCCATGAAAGTAGCAGTCCTGAATCCAGTAAAGGTAAGAAGTCTAGTAGAGATCAAGATAGAAGTCCAGATTCAAAAAAGAGACCAAGTAGCAAAGAGAGAGAATCAAAATCATACTCGCACAGGAGTAATGAAAAAGAAAAGACCAGATCCTCAGCTGAAAAAGAAATTAACCAAAAATCTGAGAGTCAGGAAAGAGATCATGCCCCTAGTAAGGATAAAAAGTCTGATCGTGAAACAAGTCCTGGAACAGATGATGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009839:ENSGALT00000015996:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTACCGGACTCCTTCCAGA
R:
ACCTCTTTTCTTGGTCTTGCT
Band lengths:
354-663
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]