HsaINT0137660 @ hg19
Intron Retention
Gene
ENSG00000105808 | RASA4
Description
RAS p21 protein activator 4 [Source:HGNC Symbol;Acc:23181]
Coordinates
chr7:102234154-102234689:-
Coord C1 exon
chr7:102234497-102234689
Coord A exon
chr7:102234292-102234496
Coord C2 exon
chr7:102234154-102234291
Length
205 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGC
5' ss Score
7.52
3' ss Seq
GCTCTTCCGCACCCCTCCAGAAT
3' ss Score
6.77
Exon sequences
Seq C1 exon
GTGCTCCGGGCTGCACCGCCCGCAGACCGAGGCCGAGGTGCTGGAGCAGAGCGCGCAGACGCTGCGCGCCCACCTGGGGGCCCTGCTGAGCGCGCTCAGCCGCTCGGTTCGCGCGTGCCCCGCCGTGGTGCGCGCCACCTTCCGCCAGCTCTTCCGGCGCGTGCGCGAGCGCTTCCCCGGCGCCCAGCACGAG
Seq A exon
GTGCGCCCTCCACCCGCTGGGCTAGGCTGGGCCGGGTTGGACTGGGCTGGGGCGAGGGGTGAAGAGCGGTGGGGAACCAGGGAGCGCTGGGGAGGACCAGGGAGGCTGTGTCCCAGCGAGGGTCAGGGACGGAGCCTAAGGGGAGGGGGCTGCCAGGAGCCCTGGTCTGGGGGACTCCAGCCCGCGCTCTTCCGCACCCCTCCAG
Seq C2 exon
AATGTACCGTTCATCGCCGTCACCAGCTTCCTGTGCCTGCGCTTCTTCTCTCCCGCCATCATGTCGCCCAAGCTCTTCCACCTGCGGGAGCGCCACGCGGACGCCCGCACCAGCCGCACCCTGCTCCTGTTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105808-RASA4:NM_006989:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(33.7=100)
A:
NA
C2:
PF0061614=RasGAP=FE(23.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCGAGGTGCTGGAG
R:
CTTGGCCAACAGGAGCAGG
Band lengths:
303-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)