HsaINT0137660 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:102593707-102594242:-
Coord C1 exon
chr7:102594050-102594242
Coord A exon
chr7:102593845-102594049
Coord C2 exon
chr7:102593707-102593844
Length
205 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGC
5' ss Score
7.52
3' ss Seq
GCTCTTCCGCACCCCTCCAGAAT
3' ss Score
6.77
Exon sequences
Seq C1 exon
GTGCTCCGGGCTGCACCGCCCGCAGACCGAGGCCGAGGTGCTGGAGCAGAGCGCGCAGACGCTGCGCGCCCACCTGGGGGCCCTGCTGAGCGCGCTCAGCCGCTCGGTTCGCGCGTGCCCCGCCGTGGTGCGCGCCACCTTCCGCCAGCTCTTCCGGCGCGTGCGCGAGCGCTTCCCCGGCGCCCAGCACGAG
Seq A exon
GTGCGCCCTCCACCCGCTGGGCTAGGCTGGGCCGGGTTGGACTGGGCTGGGGCGAGGGGTGAAGAGCGGTGGGGAACCAGGGAGCGCTGGGGAGGACCAGGGAGGCTGTGTCCCAGCGAGGGTCAGGGACGGAGCCTAAGGGGAGGGGGCTGCCAGGAGCCCTGGTCTGGGGGACTCCAGCCCGCGCTCTTCCGCACCCCTCCAG
Seq C2 exon
AATGTACCGTTCATCGCCGTCACCAGCTTCCTGTGCCTGCGCTTCTTCTCTCCCGCCATCATGTCGCCCAAGCTCTTCCACCTGCGGGAGCGCCACGCGGACGCCCGCACCAGCCGCACCCTGCTCCTGTTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105808:ENST00000262940:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(33.7=100)
A:
NA
C2:
PF0061614=RasGAP=FE(23.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCGAGGTGCTGGAG
R:
CTTGGCCAACAGGAGCAGG
Band lengths:
303-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains