HsaINT0137661 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:102592994-102593844:-
Coord C1 exon
chr7:102593707-102593844
Coord A exon
chr7:102593139-102593706
Coord C2 exon
chr7:102592994-102593138
Length
568 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
3' ss Seq
CTTCCTGCTGTCACCTCCAGGCA
3' ss Score
10.58
Exon sequences
Seq C1 exon
AATGTACCGTTCATCGCCGTCACCAGCTTCCTGTGCCTGCGCTTCTTCTCTCCCGCCATCATGTCGCCCAAGCTCTTCCACCTGCGGGAGCGCCACGCGGACGCCCGCACCAGCCGCACCCTGCTCCTGTTGGCCAAG
Seq A exon
GTGCGGGCCTTGCGGCCACGGGCGGGATGCACAGCTGGGTGTCCTACCGGGGCCCTGGCCTGGACTGCAGAGTGTTCCCTACCGGCTCCGGCGAGGCCACTGGCACGCCCACGTAGGCACTGCACTTCACAGTTTGCAAAGCCTTCCTGTGGCCACCTTGTCCGAGCTCCATCTCATGGATAAGGGAACAGGCCTGCGAGGGGTCGGGGGTTGCCAAGGCCGCCCATCCTGTCGGTGGTGAATCGCGGGACCTTCCAACCCGGGTCTGCTTACTCTCAGGCTGCACCTATGTGCCCGGCACCGGGGTGGGGTATCCAGTGCAGCAGCGTCAGTTAAACCTACAGAGGAAGGCCCAAGTGGTCTCAGTTATCATAAGGCATCAAACTTCATGATCCTCTCCTCCCTGATCCCTAGTGGGGCTGGAGGGGGCCCGTGGGCATGGCCTCTGTCGCCTCTGCCTCCATCGCTACAGCTGAGTAGCAAAGACTTGGGGAGGGGGGGTGGGAGGGGGTGCAGTGGCTAGGCCCCTAACCTAGCAGAACCTGGTCCTTCCTGCTGTCACCTCCAG
Seq C2 exon
GCAGTCCAGAACGTGGGCAACATGGACACGCCGGCTTCCAGGGCCAAGGAGGCTTGGATGGAGCCGCTGCAGCCCACCGTGCGCCAGGGCGTGGCGCAGCTGAAGGACTTCATCACCAAGCTCGTGGACATCGAGGAGAAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105808:ENST00000262940:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(23.7=100)
A:
NA
C2:
PF0061614=RasGAP=PD(3.2=12.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTACCGTTCATCGCCGTC
R:
CCTTCTCCTCGATGTCCACGA
Band lengths:
280-848
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains