HsaINT0138704 @ hg19
Intron Retention
Gene
ENSG00000147274 | RBMX
Description
RNA binding motif protein, X-linked [Source:HGNC Symbol;Acc:9910]
Coordinates
chrX:135955606-135957327:-
Coord C1 exon
chrX:135957245-135957327
Coord A exon
chrX:135956612-135957244
Coord C2 exon
chrX:135955606-135956611
Length
633 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CCTGACCATTGACCCTGCAGGTA
3' ss Score
9.1
Exon sequences
Seq C1 exon
CGATAGAGATGGATATGGTCGTGATCGTGACTATTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCATATGAGAGTTATG
Seq A exon
GTAAGATACTGGTTAAGGGTCTTTAGTATCACCAGCTTGAGTTTTTAGGTTCGTGAGCCAGTTTATTAGGCTGTGTGGTGCTTGCTTTTAAAGGGATGTTTGCTTGCTTTTAAAGGGGTAACTTTATCAGCTGGGCTTTTCCTAGTTTTGTGAGGGGCTTTTTTTGTTTTTCTAAGTTTCTTTTGAGGCTGTTTGCTTGCTTTGGAGGGGATTTTGCTTGCTTAAATTGGCAGCCTTATGTGTTTTCCCCCAACAGTGAAAATACAATTTAAAAATTTTATTAACAAGATCAAATATTTACCATTGCAATATGAAGGCAAGTTCTACAGTTCAAAATTGCAACTTATCACTGGAAAGTGGCTGAGTGTCTACTATAAAATAACAAGCTCTCTGGAATATCCTCTTGAAATACACACCGTCTTCAGTCTTTTCAAACAAACATTAAAATGAATCCAATTCCATATCTCAGCAGATGAGCAAATCCCTGTTATGGCCAGCAATGGCAGAGTTTAAAACCTCCCACCCAGTTGAGAAAGTAAACTTTTAATACAAGAATTCTGTAAATTCAGATTTAAAATGTTGTATATATACAATTTATAGTGTTGCCATATTACCTGACCATTGACCCTGCAG
Seq C2 exon
GTAACTCACGTAGTGCTCCACCTACACGAGGGCCCCCGCCATCTTATGGTGGAAGCAGTCGCTATGATGATTACAGCAGCTCACGTGACGGATATGGTGGAAGTCGAGACAGTTACTCAAGCAGCCGAAGTGATCTCTACTCAAGTGGTCGTGATCGGGTTGGCAGACAAGAAAGAGGGCTTCCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGCGGAGCACCAAGAGGTGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATACTAGAAACAAACAAAACTTTGGACCAAAATCCCAGTTCAAAGAAACAAAAAGTGGAAACTATTCTATCATAACTACCCAAGGACTACTAAAAGGAAAAATTGTGTTACTTTTTTTAAATTCCCTGTTAAGTTCCCCTCCATAATTTTTATGTTCTTGTGAGGAAAAAAGTAAAACATGTTTAATTTTATTTGACTTTCGCATTGCTTTTCAACAAGCAAATGTTAAATGTGTTAAGACTTGTACTAGTGTTGTAACTTTCCAAGTAAAAGTATCCCCTAAAGGCCACTTCCTATCTGATTTTTCCCAGCAAATGAGGCAGGCAATTCTAAGATCTTCCACAAAACATCTAGCCATCTAAAATGGAGAGATGAATCATTCTACCTATACAAACAAGCTAGCTATTAGAGGGTGGTTGGGGTATGCTACTCATAAGATTTCAGGGTGTCTTCCAACTGAAATCTCAATGTTCTCAGTACGAAAAACCTGAAATCACATGCCTATGTAAGGAAAGTGCTATTCACCCAGTAAACCCAAAAAAGCAAATGGATAATGCTGGCCATTTTGCCTTTCTGACATTTCCTTGGGAATCTGCAAGAACCTCCCCTTTCCCTTCCCCCAATAAGACCATTTAAGTGTGTGTTAAACAACTACAGAATACTAAATAAAAAGTTTGGCCAAAACCAACCATGAAGCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147274-RBMX:NR_028477:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGTGGAGGTTCCTACAGA
R:
AGTATCTGCTTCTGCCTCCCC
Band lengths:
350-983
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)