MmuINT0132979 @ mm9
Intron Retention
Gene
ENSMUSG00000031134 | Rbmx
Description
RNA binding motif protein, X chromosome [Source:MGI Symbol;Acc:MGI:1343044]
Coordinates
chrX:54639207-54641320:-
Coord C1 exon
chrX:54641238-54641320
Coord A exon
chrX:54640571-54641237
Coord C2 exon
chrX:54639207-54640570
Length
667 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CCTGACCATTGACCCTGCAGGTA
3' ss Score
9.1
Exon sequences
Seq C1 exon
TGATAGAGATGGCTATGGTCGGGATCGGGACTATTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCGTATGAGAGTTATG
Seq A exon
GTAAGATACCGGTTAAGGATCTTAAACTATCACCAGCTTGAGGTTTTAGGTTCATGAGCTGGATTAATAGGCTGCGTGGTGCTTGCTTTTAAAGGGACATTTGCTTGCTTTCAAGGGGTAACTTTATCAGCTGGGCTTTTCCTAGTTTTGTGAAGGGTGTTTTGGTTCTTTCCTTGTTTTGTTTTTTGTTTGTTTGTTGTTTTGTTTTGTTTTTACTTTTGAGGCTGTTCGCTTGCTTTGGAGGGGATTTTGCTTGCTTAAATTGGCAGCCTTATGTGTTTTCCCCCCCAACAGTGAAAATACAATTTAAAAATTTTATTAACCAGATCAAATATTTACCATTGCAATATGAAGGAAACTCAACAGTTCAAAAATTGCAACTTATCACTGGAAAGTGGCTGAGTGTCTACTCTAAAATAACAAGCTGTCTGGAATGTCCTCTTGAAATACACAACGTCTTCAGTCTTTTCAAACAAACATTAAAATCAATCCGTTTCCGTACCTCAGCAGATGAGCAATTCCCTCTTATGGCCAGCAATGGTAGAGTTTAAAACTTCCCAGTTGAGAAAGTGAACTTTTAATACAAAGAATTCTGTAAATTCAGATTTAAATGTTGTATATATACAATTTATAGTGTTGCCATATTACCTGACCATTGACCCTGCAG
Seq C2 exon
GTAACTCACGTAGTGCTCCACCTACACGAGGGCCCCCGCCATCTTATGGTGGAAGCAGTCGCTATGATGATTACAGCAGCTCACGTGACGGATATGGTGGAAGTCGAGACAGTTACTCAAGCAGCCGAAGTGATCTCTACTCAAGTGGTCGTGATCGCGTGGGCAGACAAGAAAGAGGGCTTCCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGCGGAGCACCAAGAGGTGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATACTAGGAACAAACAAAACTTTTGGACCAAAAAAATCCCCATTCAAAGCAACAAACAAAAGTGGAAACTTTCTGTCATAAACTACCCAAGGACTACTAAAAGGAAAAATTGTGTTACCTTTTTAAAATTTCCTGTTCCCTTTTAATAATTTTTATGTTCTTGTGAGGGAAAAAGTAAGACGTGTTTAATTTTATTTGCTAGTATGAGCTGCTTTCAACAAGCAAATGGTAGATGTGTGAGCCTTGACTTGTTCCTAGTGTTGTAATTTTCCAAGTGAAAGTGTCCCTGAAGGCCAGCCACTTCCTGATTTTTTTCCCCAGTAAATGAGGCAAGCAACCCCAAGATCATCCACAAACTTCCAGCCATCTAGATGGCCTCTGGTCTCCACTGAGAGCTGAATCGCCCTGCCTGTGCAGACAAGCTAGCCATTAGAGAGGGTTGGTTGGGTGTGCTACTTTCAGTATTTCAGGGTGTCTTCCAACTGAAATCTCAATCTTCGCAGTATATATATTAAAACCAACGAGCAAACCTGAGCTCCGATGCCTAGGATGTACTGTTTACCCAGAAACCCCCCAAAAAAGCAGATGGATACTGGCCATATTTTGCTTTTTTGACACTTCCTTGGGAATCTACAAGAACCTCCCTTCCCCCTCCCCGAGTAAGACCTAAGACCATTTAAGTGTGTGTTAAACAACTACAAAATACTCAATAAAACGTTTGGCCAAAGTCAACCCTGAAGCTGCAAACCGATGCTTGCTCTTACTGTTTCAAATTTTTGCAACTCTGTAGTGTCTCACTTTTAAAGGAACAGCTTGATTGCAAAGGAGAAAATAGATAAGCAATGAAGTTATCTCCAACTTCCTAAAGGCTTATGACTTCTAAAAAGTGAATCTATCAGCATTCCACATCAGATTTAAAGCACCAAATGCCCGTGAAACAGCAAAGATGGTAAGCAAAGCAAACTAGTTTTTCCGTCTAAGTCGAAATTGAGCACTTACCTTCCTCATAGTACAGTGATGCCTACTGTACTTCCTGGCAGTGGAAATGCCTTCTAGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031134-Rbmx:NM_011252:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGGGATCGGGACTATTCA
R:
ATCAGATCGGCTTCCTCCACG
Band lengths:
351-1018
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: