MmuEX0039215 @ mm9
Exon Skipping
Gene
ENSMUSG00000031134 | Rbmx
Description
RNA binding motif protein, X chromosome [Source:MGI Symbol;Acc:MGI:1343044]
Coordinates
chrX:54638310-54641320:-
Coord C1 exon
chrX:54641238-54641320
Coord A exon
chrX:54639318-54640570
Coord C2 exon
chrX:54638310-54638398
Length
1253 bp
Sequences
Splice sites
3' ss Seq
CCTGACCATTGACCCTGCAGGTA
3' ss Score
9.1
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
TGATAGAGATGGCTATGGTCGGGATCGGGACTATTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCGTATGAGAGTTATG
Seq A exon
GTAACTCACGTAGTGCTCCACCTACACGAGGGCCCCCGCCATCTTATGGTGGAAGCAGTCGCTATGATGATTACAGCAGCTCACGTGACGGATATGGTGGAAGTCGAGACAGTTACTCAAGCAGCCGAAGTGATCTCTACTCAAGTGGTCGTGATCGCGTGGGCAGACAAGAAAGAGGGCTTCCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGCGGAGCACCAAGAGGTGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATACTAGGAACAAACAAAACTTTTGGACCAAAAAAATCCCCATTCAAAGCAACAAACAAAAGTGGAAACTTTCTGTCATAAACTACCCAAGGACTACTAAAAGGAAAAATTGTGTTACCTTTTTAAAATTTCCTGTTCCCTTTTAATAATTTTTATGTTCTTGTGAGGGAAAAAGTAAGACGTGTTTAATTTTATTTGCTAGTATGAGCTGCTTTCAACAAGCAAATGGTAGATGTGTGAGCCTTGACTTGTTCCTAGTGTTGTAATTTTCCAAGTGAAAGTGTCCCTGAAGGCCAGCCACTTCCTGATTTTTTTCCCCAGTAAATGAGGCAAGCAACCCCAAGATCATCCACAAACTTCCAGCCATCTAGATGGCCTCTGGTCTCCACTGAGAGCTGAATCGCCCTGCCTGTGCAGACAAGCTAGCCATTAGAGAGGGTTGGTTGGGTGTGCTACTTTCAGTATTTCAGGGTGTCTTCCAACTGAAATCTCAATCTTCGCAGTATATATATTAAAACCAACGAGCAAACCTGAGCTCCGATGCCTAGGATGTACTGTTTACCCAGAAACCCCCCAAAAAAGCAGATGGATACTGGCCATATTTTGCTTTTTTGACACTTCCTTGGGAATCTACAAGAACCTCCCTTCCCCCTCCCCGAGTAAGACCTAAGACCATTTAAGTGTGTGTTAAACAACTACAAAATACTCAATAAAACGTTTGGCCAAAGTCAACCCTGAAGCTGCAAACCGATGCTTGCTCTTACTGTTTCAAATTTTTGCAACTCTGTAGTGTCTCACTTTTAAAGGAACAGCTTGATTGCAAAGGAGAAAATAGATAAGCAATGAAGTTATCTCCAACTTCCTAAAGGCTTATGACTTCTAAAAAGTGAATCTATCAGCATTCCACATCAGATTTAAAGCACCAAATGCCCGTGAAACAGCAAAGATG
Seq C2 exon
GTTGAATCTAATGGTCATACTGTCCTGGAGTGCTGATTGATTGATTCACAGTAGATAAAGCTGGCAGTAAGGAACAATCAGATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031134_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: