MmuEX0039215 @ mm10
Exon Skipping
Gene
ENSMUSG00000031134 | Rbmx
Description
RNA binding motif protein, X chromosome [Source:MGI Symbol;Acc:MGI:1343044]
Coordinates
chrX:57385133-57388143:-
Coord C1 exon
chrX:57388061-57388143
Coord A exon
chrX:57386141-57387393
Coord C2 exon
chrX:57385133-57385221
Length
1253 bp
Sequences
Splice sites
3' ss Seq
CCTGACCATTGACCCTGCAGGTA
3' ss Score
9.1
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
TGATAGAGATGGCTATGGTCGGGATCGGGACTATTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCGTATGAGAGTTATG
Seq A exon
GTAACTCACGTAGTGCTCCACCTACACGAGGGCCCCCGCCATCTTATGGTGGAAGCAGTCGCTATGATGATTACAGCAGCTCACGTGACGGATATGGTGGAAGTCGAGACAGTTACTCAAGCAGCCGAAGTGATCTCTACTCAAGTGGTCGTGATCGCGTGGGCAGACAAGAAAGAGGGCTTCCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGCGGAGCACCAAGAGGTGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATACTAGGAACAAACAAAACTTTTGGACCAAAAAAATCCCCATTCAAAGCAACAAACAAAAGTGGAAACTTTCTGTCATAAACTACCCAAGGACTACTAAAAGGAAAAATTGTGTTACCTTTTTAAAATTTCCTGTTCCCTTTTAATAATTTTTATGTTCTTGTGAGGGAAAAAGTAAGACGTGTTTAATTTTATTTGCTAGTATGAGCTGCTTTCAACAAGCAAATGGTAGATGTGTGAGCCTTGACTTGTTCCTAGTGTTGTAATTTTCCAAGTGAAAGTGTCCCTGAAGGCCAGCCACTTCCTGATTTTTTTCCCCAGTAAATGAGGCAAGCAACCCCAAGATCATCCACAAACTTCCAGCCATCTAGATGGCCTCTGGTCTCCACTGAGAGCTGAATCGCCCTGCCTGTGCAGACAAGCTAGCCATTAGAGAGGGTTGGTTGGGTGTGCTACTTTCAGTATTTCAGGGTGTCTTCCAACTGAAATCTCAATCTTCGCAGTATATATATTAAAACCAACGAGCAAACCTGAGCTCCGATGCCTAGGATGTACTGTTTACCCAGAAACCCCCCAAAAAAGCAGATGGATACTGGCCATATTTTGCTTTTTTGACACTTCCTTGGGAATCTACAAGAACCTCCCTTCCCCCTCCCCGAGTAAGACCTAAGACCATTTAAGTGTGTGTTAAACAACTACAAAATACTCAATAAAACGTTTGGCCAAAGTCAACCCTGAAGCTGCAAACCGATGCTTGCTCTTACTGTTTCAAATTTTTGCAACTCTGTAGTGTCTCACTTTTAAAGGAACAGCTTGATTGCAAAGGAGAAAATAGATAAGCAATGAAGTTATCTCCAACTTCCTAAAGGCTTATGACTTCTAAAAAGTGAATCTATCAGCATTCCACATCAGATTTAAAGCACCAAATGCCCGTGAAACAGCAAAGATG
Seq C2 exon
GTTGAATCTAATGGTCATACTGTCCTGGAGTGCTGATTGATTGATTCACAGTAGATAAAGCTGGCAGTAAGGAACAATCAGATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031134_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000140384fB3405
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types