DreEX0061396 @ danRer10
Exon Skipping
Gene
ENSDARG00000014244 | rbmx
Description
RNA binding motif protein, X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-579]
Coordinates
chr14:31516406-31518707:-
Coord C1 exon
chr14:31518616-31518707
Coord A exon
chr14:31517136-31518074
Coord C2 exon
chr14:31516406-31516505
Length
939 bp
Sequences
Splice sites
3' ss Seq
ATGACCCATTGACCCTGCAGGTA
3' ss Score
9.2
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
TGATCGTGATGGCTATGGTGGAGGACGAGAGCCCCGGGGTTATATAGATCGACCCAGTGCAGGCTCCTATAGAGATCCTTATGATGGTTACG
Seq A exon
GTAACTCACGCAGCGCCCCACCCTCAAGGGGTCCCCCTCCGTCCTACAGTGGGAGTGGCGGAAGCAGTCGTTATGACGACTATGGCAGCAGTTCCCGGGATGGATATGGCAGTCGTGACAGTTATCCCAGCAGTCGGAGTGACCCGTACTCCACTAATCGTGGTGACCGACCGGGTAGGCAGGAGCGAGGGCCTCCCCCACTCGAAAGAGGCTATCCTCGTGAATACAGCAGCTCAAGCCGTGGGGCACCTCGTGGGGGTGGACGCGGTGGCCGCCGACCTGATAGAGGAATGGGCCGAAACCGATACTGAAATGGACTGTGGAGATGAAAAATGAGTCGGAGAAATGAAATGGTGGCTTCTCGTTCAAAAGACTTTGAGCTTCAAAAGCGTTCTTTTAAACACTGAACTTCAAGCTTCCGTTTCAAGCTGTACCCAAACTTGTGACGTTTTTTTTATTTTGTAATTTTTAAATGCAAAGTTCTTTTCTCTACCCAGCTCACATTTACTGGTACCGTTGCAAATCTTAAGTGTGTTCTTTGTTTTCTAGTGATTTGTAAAACCTGCAATGCCGTAACGTTGGCTTTCATTTACCAATAAAGTGTTTTTAATCAAAATTTAATCCGCACTATTCAAGAGAATGAGAAACTATGAAGCATAAATATCCATTCGCCTCTAAAGCTTTCCATGGTGAGCACCCCCAAATGCCTCGTAATATAGATTTAATGCAGAATATTTATGTAGGCATGATTGTTCACACATTGTTGGGGACTGGACAAATGTCAACTTTTTTGCAAACTCTCTATGGGTGTAGTTTTCCTCAGTGCAAATGGATCCTTCATCACAAAGCCTAAACATTGACGCCTTGCATCGACCAATCGAAAGACAACCAAAATGCAGGAAACAATTCAGCACCACAGATAAAACCTGTCAACAGCTG
Seq C2 exon
GATAAATGGAGGAAAAACTGCTTTGACGGTAATACTTCATTGCTGAGCAGTACCAACTGTCAATTATGGATGAAGCAGGATGGTCCATGGTGTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014244_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000138084fB5168
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCGTGATGGCTATGGTGG
R:
CACCATGGACCATCCTGCTTC
Band lengths:
184-1123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]