GgaEX1048668 @ galGal4
Exon Skipping
Gene
ENSGALG00000006457 | RBMX
Description
heterogeneous nuclear ribonucleoprotein G [Source:RefSeq peptide;Acc:NP_001073196]
Coordinates
chr4:4388428-4391268:-
Coord C1 exon
chr4:4391165-4391268
Coord A exon
chr4:4389397-4389548
Coord C2 exon
chr4:4388428-4388516
Length
152 bp
Sequences
Splice sites
3' ss Seq
GTAGTGTTTCACTTTTAAAGGAA
3' ss Score
6.73
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
TCTTTCCTCTTACAGCGATCGTGATGGATACGGTGGTGGACGTGACAGAGACTACTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCGTATGAGAGTTATG
Seq A exon
GAACATCTTTGATTCCAAAGGAGAAAATAAGATAAGCAAAGAAGTCTTTCTCTCCAACTTCTCAAAGGCTTATGGCTTCCTAAAAACAAGTGAAACTTTCAGCATTCCACAGCTGATTTAAAGCAACAAATGCCTGTGAAACAGCAAAGATG
Seq C2 exon
GATGATAACTTCTGGAAGATGCTTCGGAAGTAAAGCAGCTTCGTCTGGTTTGGTGGCAGAGATGAGTGGTGCCTGTACTGATAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006457_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTTACAGCGATCGTGATGG
R:
TGATCTATCAGTACAGGCACCACT
Band lengths:
187-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]