HsaEX0052801 @ hg19
Exon Skipping
Gene
ENSG00000147274 | RBMX
Description
RNA binding motif protein, X-linked [Source:HGNC Symbol;Acc:9910]
Coordinates
chrX:135954427-135957327:-
Coord C1 exon
chrX:135957245-135957327
Coord A exon
chrX:135955405-135955547
Coord C2 exon
chrX:135954427-135954504
Length
143 bp
Sequences
Splice sites
3' ss Seq
GTAGTGTCTCACTTTTAAAGGAA
3' ss Score
7.14
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
CGATAGAGATGGATATGGTCGTGATCGTGACTATTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCATATGAGAGTTATG
Seq A exon
GAACAGCTTGATTGCAAAGGAGAAAATAGATAAGCAATGAAGTTATCTCCAACTTCCTAAAGGCTTATGACTTCTAAAAAGTGAATCTATCAGCATTCCACATCAGATTTAAAGCATCAAATGCCTGTGAAACAGCAAAGATG
Seq C2 exon
GTTGGTGATTTTGCTCATTATGGTCGTGGAGTGCTGATTGATTCACAGTAGATAAAGCTGGCAGTAAGAAATGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147274_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=0.091 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATGGATATGGTCGTGATCGT
R:
AGCATTTCTTACTGCCAGCTT
Band lengths:
154-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)