RnoEX0074780 @ rn6
Exon Skipping
Gene
ENSRNOG00000000866 | Rbmx
Description
RNA binding motif protein, X-linked [Source:RGD Symbol;Acc:1565256]
Coordinates
chrX:159883665-159886625:-
Coord C1 exon
chrX:159886543-159886625
Coord A exon
chrX:159884642-159884784
Coord C2 exon
chrX:159883665-159883749
Length
143 bp
Sequences
Splice sites
3' ss Seq
GTAGTGTCTCACTTTTAAAGGAA
3' ss Score
7.14
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
TGATAGAGATGGATATGGTCGGGAGCGTGACTATTCGGATCATCCAAGTGGAGGTTCCTACAGAGATTCGTATGAGAGTTATG
Seq A exon
GAACAGCTTGATTGCAAAGGAGAAAATAGATAAGCAATGAAGTTATCTCCAACCTCCTAAAGGCTTATGACTTCTAAAAAGTGAATCTATCAGCATTCCACATCAGATTTAAAGCACCAAATGCCTGTGAAACAGCAAAGATG
Seq C2 exon
GTTGAACCTAATGGTCATACAGTCATGGAGTGCTGATTGATTCACAGTAGATAAAGCTGGCAGTAAGAGACAGTCAAATGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000866_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATGGATATGGTCGGGAGC
R:
GATCATTTGACTGTCTCTTACTGCCA
Band lengths:
162-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]