BtaEX0029990 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013308 | RBMX
Description
Bos taurus RNA binding motif protein, X-linked (RBMX), mRNA. [Source:RefSeq mRNA;Acc:NM_001172039]
Coordinates
chrX:20456003-20458914:-
Coord C1 exon
chrX:20458832-20458914
Coord A exon
chrX:20456980-20457137
Coord C2 exon
chrX:20456003-20456094
Length
158 bp
Sequences
Splice sites
3' ss Seq
AAATTTTTGCAACTCTGTAGTGT
3' ss Score
3.09
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
TGATAGAGATGGCTATGGTCGTGATCGTGACTATTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCATATGAGAGTTATG
Seq A exon
TGTCTCACTTTTAAGGAACAGCTTGATTGCAAAGGAGAAAATAGATAAGCAATGAAGTTATCTCCAACTTCTCAAAGGCTTATGACTTCTAAAAAGTGAATCTATCAGCATTCCACATCAGATTTAAAGCATCAAATGCCTGTGAAACAGCAAAGATG
Seq C2 exon
GTTGAGAATTTTGGTCATGGTCATGATGGTCATGGAGTGCTGATTTTTTTCACACTAGATAAAGCTGGCAACAAGAGAAATGCAATGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013308_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATAGAGATGGCTATGGTCGTGA
R:
GCATTGCATTTCTCTTGTTGCCA
Band lengths:
171-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development