BtaINT0123494 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013308 | RBMX
Description
Bos taurus RNA binding motif protein, X-linked (RBMX), mRNA. [Source:RefSeq mRNA;Acc:NM_001172039]
Coordinates
chrX:20457677-20458914:-
Coord C1 exon
chrX:20458832-20458914
Coord A exon
chrX:20458203-20458831
Coord C2 exon
chrX:20457677-20458202
Length
629 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CCTGACCATTGACCCTGCAGGTA
3' ss Score
9.1
Exon sequences
Seq C1 exon
TGATAGAGATGGCTATGGTCGTGATCGTGACTATTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCATATGAGAGTTATG
Seq A exon
GTAAGATTTTGGTTGAGGGTCTCTGACTATCACCAGCTTGAGTTTTTAGGTTCATGAGCCAGTTTATTAGGCTGTTGTGGTGCTTGCTTTTAAAGGGATGTTTGCTTGCTTTTAAGGGGGTAATTTATTCAGCTGGGCTTTTCCTAGTCTTGTGAGGGGCTTTTGTTTTTTCTAAGTTTTTTTTGAGGCTGTTGGCTTGCTTTGGAGGGGATTTTGCTTGCTTAAATTGGCAGCCTTATGTGTTTTCCCCCAACAGTGAAAATACAATTTAAAAACTTTATTAACAAGATCAAATGTTTACCATTGCAATATGAAGGAAAGTCTACAGTTCAAAATTGCAACTTATCACTGGAAAGTTGGCTGAGTGTCTACTATAAAATAACAAGCTGTCTGGAATATCCTCTTGAAATACACACCGTCTTCAGTCTTTTCAAACAAACATTAAAACCCACCCATTTCCGTGTCTCAGCAGATGAGCAAATCCCTGTTAATGGCCAGCAATGGCAGAGTTTAAAACCTCCCAGTTAAGACAGTAAACGTTTAATACAAGAATTCTGTAAATTCAGATTTAAATGTTGTATATATACAATTTATAGTGTTGCCATATTACCTGACCATTGACCCTGCAG
Seq C2 exon
GTAACTCACGTAGTGCTCCACCTACACGAGGGCCCCCGCCATCTTATGGTGGAAGCAGTCGCTATGATGATTACAGCAGCTCACGTGACGGATATGGTGGAAGTCGAGACAGTTACTCAAGCAGCCGAAGTGATCTCTACTCAAGTGGTCGTGATCGGGTTGGCAGACAAGAAAGAGGGCTTCCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGAGATTCCTACAGCAGTTCAAGCCGCGGAGCACCAAGAGGTGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATATTAAAAACAAACAACTTGGACCAAAATCCCTGTTCAAAGAAACAAACAAAAGTGGAACCTGTTCTATCATAACTACCCAAGGACTACTAAAAGGAAAGATTGTGTTACTTTTTTTAAATTTCCTGTTAAGTTCCCTTTCCATAATTTTTATGTTCTTGTGAGGAAAGAAAGTAAAACATGTTTAATCTTTGATTTTATGACATTGCTTTCAACAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013308:ENSBTAT00000017696:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTATGGTCGTGATCGTGAC
R:
ATCAGATCGGCTTCCTCCACG
Band lengths:
357-986
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]