GgaINT0069892 @ galGal3
Intron Retention
Description
NA
Coordinates
chr4:4422127-4423338:-
Coord C1 exon
chr4:4423235-4423338
Coord A exon
chr4:4422740-4423234
Coord C2 exon
chr4:4422127-4422739
Length
495 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CCTGACCATTGACCCTGCAGGTA
3' ss Score
9.1
Exon sequences
Seq C1 exon
TCTTTCCTCTTACAGCGATCGTGATGGATACGGTGGTGGACGTGACAGAGACTACTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCGTATGAGAGTTATG
Seq A exon
GTAAGAATCCATTTTGAGGATCATGCAGTAATTTGTATGGGTTTCGTGAAGCCTGACTTCTACGGGTTGATCGTGTTTTAGGGGGAAGTGGCACTTTTTTTTCCCCTACAGTGAAAGTGCAGTTGTTGGTTATCATTTGATCACACTGTTAAGCTATAAGTTAAAGAAGCAAAGTCTACAGTTCAGAATTACAGCTATCTCTGGAAAATGTGGCTGAGTTTCTTCTCTAAAATAACAAGCTGTTCTGGAATACCCAGTAAAGAGCCTGCCTGAATAAACACCGTCTTCATTCCTTCAAAGTCTATTAAATCCACTCACTGCCTGATACGCAATTCCCACTTAAAATACCATTAACATGGCAGATTAAATAAAGAACATCTCAATGCATACAAAAGAGTAAAAGTAAACATTTAATACAGCAATTCTGTAAATTCAGATTGAAATTGTTTATATAACTTATGGTGTTGCCATATTACCTGACCATTGACCCTGCAG
Seq C2 exon
GTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCCGCCATCTTATGGTGGAAGCAGTCGATATGATGATTACGGCAGCACACGTGATGGATATGGAAGCCGAGAAAGTTACTCAAGCAGCAGAAGTGATGTCTACTCAAGTGGCCGTGATCGTGTTGGAAGACAAGACAGGGGTCTTCCCCCATCCATGGAAAGGGGCTATCCACCTCCTCGTGATTCATACAGTAGTTCAAGCCGCGGAGCACCCAGAGGTGGTGGCCGTGGCGGAAGCAGATCTGACAGAGGTGGAGGCAGAAGCAGATACTAAAAACACTCTTAACTTTTTTTGGACCAAGACATTACTTCTCAAACAAATTAAAAAAAAAAAAGTGGAAGTTCTATCTTTACTACCAGAGGACTACTAAAAGGAAAAGTTGTTTTTACCTTTTTTTATTGTTGCCTGTTAAGTTTTCCCCTCCATGACTTTTATGCTTTTGTGAAGAAAAGTTAAACCAGTGTTTAATTTCATTTCAGAATTGTTAACATTTCTTTCAAAAGGCAGATGTTAAATGTATAAAATTTGAGCTGTGTACTAGTGTTGTAATTTCCAAAGTAAAGTTTCCCTGAAATGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006457:ENSGALT00000010428:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGACGTGACAGAGACT
R:
CTCTGTCAGATCTGCTTCCGC
Band lengths:
357-852
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]