DreINT0125530 @ danRer10
Intron Retention
Gene
ENSDARG00000014244 | rbmx
Description
RNA binding motif protein, X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-579]
Coordinates
chr14:31517459-31518707:-
Coord C1 exon
chr14:31518616-31518707
Coord A exon
chr14:31518075-31518615
Coord C2 exon
chr14:31517459-31518074
Length
541 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
ATGACCCATTGACCCTGCAGGTA
3' ss Score
9.2
Exon sequences
Seq C1 exon
TGATCGTGATGGCTATGGTGGAGGACGAGAGCCCCGGGGTTATATAGATCGACCCAGTGCAGGCTCCTATAGAGATCCTTATGATGGTTACG
Seq A exon
GTAAGATTAAACCTGTAATGTAGTGAAAATGGTTTGAAGGGCTTTATTCAAACTGCCTGATTTGCAAAAAGAGCAGCCTCGTGATTTTGCCAGAAAGTGGAAAACTCAAACTCTGCGTCTGTTCAACCTGAATGTTCCAACCAAAATCGCACCACCAAGGAATCTCTTGCAAGCCGTTTTTACCACCCAAAGAGTCTTTTCTGTAGCATCGTCCAAACAATCGAGAGATCCAGTACCCAAACTACAATCTGGAGTTCAATCCAAACCAAGGAAAGTGTGTTACACTCCAGTGAGGTGCTTAAAAAAAAAAAAAAAAAACTGTGCGCAAATGTCAACTCTGCAGTTGGGTATTTCAGTTATCTTAAAGTAGTTCCACCTAAAAATACAAACAAAAAACTAATTTATTGCTTTTTGCTTTTGGAAACATTTGATCTACAAATGATTAAAGAAATCTAGGGAAATGGGCAATTGACAACATAGTATCATGCAAAAAAATGTTTAAGTAAATTTTTGCCAATTACATGACCCATTGACCCTGCAG
Seq C2 exon
GTAACTCACGCAGCGCCCCACCCTCAAGGGGTCCCCCTCCGTCCTACAGTGGGAGTGGCGGAAGCAGTCGTTATGACGACTATGGCAGCAGTTCCCGGGATGGATATGGCAGTCGTGACAGTTATCCCAGCAGTCGGAGTGACCCGTACTCCACTAATCGTGGTGACCGACCGGGTAGGCAGGAGCGAGGGCCTCCCCCACTCGAAAGAGGCTATCCTCGTGAATACAGCAGCTCAAGCCGTGGGGCACCTCGTGGGGGTGGACGCGGTGGCCGCCGACCTGATAGAGGAATGGGCCGAAACCGATACTGAAATGGACTGTGGAGATGAAAAATGAGTCGGAGAAATGAAATGGTGGCTTCTCGTTCAAAAGACTTTGAGCTTCAAAAGCGTTCTTTTAAACACTGAACTTCAAGCTTCCGTTTCAAGCTGTACCCAAACTTGTGACGTTTTTTTTATTTTGTAATTTTTAAATGCAAAGTTCTTTTCTCTACCCAGCTCACATTTACTGGTACCGTTGCAAATCTTAAGTGTGTTCTTTGTTTTCTAGTGATTTGTAAAACCTGCAATGCCGTAACGTTGGCTTTCATTTACCAATAAAGTGTTTTTAATCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014244:ENSDART00000128730:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCAGTGCAGGCTCCTATA
R:
CAGTATCGGTTTCGGCCCATT
Band lengths:
352-893
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]