RnoINT0125350 @ rn6
Intron Retention
Gene
ENSRNOG00000000866 | Rbmx
Description
RNA binding motif protein, X-linked [Source:RGD Symbol;Acc:1565256]
Coordinates
chrX:159884885-159886625:-
Coord C1 exon
chrX:159886543-159886625
Coord A exon
chrX:159885879-159886542
Coord C2 exon
chrX:159884885-159885878
Length
664 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CCTGACCGTTGACCCTGCAGGTA
3' ss Score
9.56
Exon sequences
Seq C1 exon
TGATAGAGATGGATATGGTCGGGAGCGTGACTATTCGGATCATCCAAGTGGAGGTTCCTACAGAGATTCGTATGAGAGTTATG
Seq A exon
GTAAGATACCGGTTAAGGATCTTAACGGTCACCAGCTTGAGGTTTTAGGTTCATGAGCTGGATTACTAGGCTGCGTGGTGCTTGCTTTTAAAGGGACATTTGCTTGCTTTCAAGGGGTAACTTTATCAGCTGGGCTTCTCCTAGTTTTGTGAAGGGTGTTTTGGTTCTTTCCTTATTTCGTTTGTTTGTTATTTTGTTTGTTTGTTTTTTTCTTTTGAGGCTGTTCGCTTGCTTTGGAGGGGATTTTGCTTGCTTAAATCGGCAGCCTTATGTGTTTTCCCCCAACAGTGAAAATACAATTTAAAAATTTTTATTAACCAGATCAAATATTTACCATTGCAATATGAAGGAAACTCAACAGTTCAAAAAAATTGCAACTTATCACTGGCAAGTGGCTGAGTGTCTACTCTAAAATAACAAGCTGTCTGGACTGTCCTCTTGAAATACACAACGTCTTCGGTCTTTTCAAACAAACGTTAAAATCAATCCGTTTCCGTACCTCAGCAGATGAGCAATTCCCTCTTATGGCCAGCAATGGTAGAGTTTAAAACTTCCCAGTTGAGAAAGTAAACTTTGAATACAAAGAATTCTGTAAATTCAGATTTAAATGTTGTATATATACAATTTATAGTGTTGCCATATTACCTGACCGTTGACCCTGCAG
Seq C2 exon
GTAACTCACGTAGTGCTCCACCTACACGAGGGCCCCCGCCATCTTATGGTGGAAGCAGTCGCTATGATGATTACAGCAGCTCACGTGACGGATATGGTGGAAGTCGAGACAGTTACACAAGCAGCCGAAGTGATCTCTACTCAAGTGGTCGTGATCGCGTGGGCAGACAAGAACGAGGGCTTCCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGCGGAGCACCAAGAGGTGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGCAGAAGCAGATACTAGGAACAAACAAAACTTTTGGACCAACAATCCCCATTCAAAGAAACAAACAAAAAAATGGAAACTTTCTGTCATAAACTACCCAAGGACTACTAAAGGAAAAATTGTGTTACCTTTTTAAAATTTCCTGTTCCCCTTAATAATTTTTATGTTCTTGTGAGGGAAAAAGTAAGACATGTTTAATTTTATTTGCTATTATGAGTTGCTTTCAACAAGCAAATGTTAGATGTGTAAGCCGTGACTTGTTACTAGTGTTGTAATTTTCCAAGTAAAAGTGTCCCTGAAGGCCACTTCCTGATTTTTCCCAGCAAATGAGGCAAGCAACCCCAAGATCTTCCACAAACATTTAGCCATCTAGATGTCCTTTGGTCTCCATTGAGAGTTGAATCACCCTGCCTGTGCAGACAAGCTAGCCATTAGAGAGGGTTGGTGGGGTGTGAGGATTTCAGGGTGTCTTCCAACTGAAATCTCAATGTTCGCAGTATATATATATTCAAACAAACAAACCAAGCTGAGATCAGATGCCTAGGCATGTACTATTTACCCAGAAACCCCCCCCCCTCAAAAAAAGCAAATGGATGCTGGCCATATTTTGCTTTTCTGACCTTTCCTTGGGAATCTACAAGAACCTCCCTTCCCCCTCCCCGAGTAAGACCATTTAAGTGTGTGTTAAACAACTACAAAATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000866:ENSRNOT00000001154:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCGTGACTATTCGGATC
R:
CCCCCTCTATCAGATCGGCTT
Band lengths:
355-1019
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]