HsaINT0141243 @ hg19
Intron Retention
Gene
ENSG00000164068 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:21148]
Coordinates
chr3:49742417-49743112:+
Coord C1 exon
chr3:49742417-49742615
Coord A exon
chr3:49742616-49742966
Coord C2 exon
chr3:49742967-49743112
Length
351 bp
Sequences
Splice sites
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
3' ss Seq
TTCCCTCCCCAACTCCCCAGTTG
3' ss Score
8.02
Exon sequences
Seq C1 exon
CGCCCCATGCAGGCCCTGGCTGTTGGGGGGCCACTGCCCCTGCCCCGGCCCGGCTGGCTCAGTTCTCCAACTTTGGGCCGAGCCAACCGCTTCCTCAGCACAGCGGCTGTGAGCCTCATGACCCCACGGCGGCCTCTGAGCACCTCGGAGAAAGTGAAGGTCCGCACGCTGAGCGTGGAGCAGAGGACCCGTGAGGACA
Seq A exon
GTAGGTGCTTGGTGGGGTCAGGCAGGTCCCCGAAGGACCCTTCCACAGTGTACAGTCCCCGATCCGGGCAAAGCCAAAATACACCCCATGCCCTCCCAGCCCTGTGGCCTGGCAGCATCCCAGGAGTGCAGGAAGCACACTCCGAGGGCAGGAGATCAATGCCGCAGAAATAGGTCCTGGCACCGCAGGCCTTGCCCTGCACTCCACCCCTACCCCCATGCCCCCATGGGCTCCCCGCGGGTCCCTCCTTGGGCACAGGAATGGGAGAGATGATTTCCTCTCCTGCTGTGAGGCAGGCTCAGGAGAGCCGGGATGGCCCTACCCTTGACCCTTCCCTCCCCAACTCCCCAG
Seq C2 exon
TTGAAGGCAGCCACTGGAATGAGGGCTTGCTGCTGGGGCGGCCCCCCGAGGAGCCTGAGCAGCCCCTCACCGAGAACTCGCTGCTGGAAGTCCTGGATGGGGCGGTCATGATGTACAACCTCAGCGTACACCAGCAGCTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164068-RNF123:NM_022064:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=NA C2=0.492
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCTCAGTTCTCCAACTT
R:
CAGCTGCTGGTGTACGCTG
Band lengths:
287-638
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)