MmuINT0135466 @ mm9
Intron Retention
Gene
ENSMUSG00000041528 | Rnf123
Description
ring finger protein 123 [Source:MGI Symbol;Acc:MGI:2148796]
Coordinates
chr9:107965202-107966012:-
Coord C1 exon
chr9:107965814-107966012
Coord A exon
chr9:107965348-107965813
Coord C2 exon
chr9:107965202-107965347
Length
466 bp
Sequences
Splice sites
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
3' ss Seq
TGCCGTGTTGTGCTCCCCAGTTG
3' ss Score
8.98
Exon sequences
Seq C1 exon
CGTCCGATGCAAGCCCTGGCCATCGGAGGGGCACTGCCCCTGCCCCGGCCAGGCTGGCTCAGTTCTCCAACCCTGGGCAGAGCCAACCGCTTCCTCAGCACGGCAGCTGTGAGCCTCATGACCCCACGGCGGCTTCTGAGCACCATGGAGAAAGTCAAAGTTCGCTCACTGAATGTGGAACAGAGGACCCGTGAGGACA
Seq A exon
GTAGGTGCTGGGCAGAGCTGCTAAGGGACCGTCTGCTGTGTGCAACCCCTTAACTCTGGCAAATACTCCCCTCCTCCCCCCACTCCCTACCACCTTGAGGTCTGGCCACACCCCAAGGGCACAGGAAGCACAGTCTGAGGATAAGAAATCAATACTACAAAAATAGGTCCTGGTGCCGCAGGGCCGCCCTGCACCCACCCGCTCCTGACCCATTCTCCCTGAAGCTCCCCTCCTGGACAAGGAAGACACAGGGAATTCCCTCTCCTCCTGGAAGGCCCAGGAGCTTGTGAATATTTAAGAGAAAAATACTGGCTGTGGCAGTGCCACCTTTTATCAGAGCCCTAGTAAAACAGAGGTAGTCAGATCTCTGTGAATTTAAGGTCAGCCAGGTCTGCATACTGAGACTCTCAAACAAACCAGAACCAAAGGCCAGAGCCTGCCTCTCATGCCGTGTTGTGCTCCCCAG
Seq C2 exon
TTGAGGGCAGCCACTGGAATGAGGGCCTGCTGTTGGGGAGGCCCCCTGAAGAGCCTGAGCAGCCGCTTACCGAGAACTCGCTGTTGGAAGTCCTGGATGGCACAGTCATGATGTATAACCTCAGCGTTCACCAGCAGCTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041528-Rnf123:NM_032543:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.482
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCGATGCAAGCCCTG
R:
GCTGGTGAACGCTGAGGTTAT
Band lengths:
334-800
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: