DreINT0127510 @ danRer10
Intron Retention
Gene
ENSDARG00000031269 | rnf123
Description
ring finger protein 123 [Source:ZFIN;Acc:ZDB-GENE-050208-529]
Coordinates
chr22:34569370-34573042:-
Coord C1 exon
chr22:34572850-34573042
Coord A exon
chr22:34569516-34572849
Coord C2 exon
chr22:34569370-34569515
Length
3334 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TCTCACTGCATCATCTCCAGTCG
3' ss Score
6.06
Exon sequences
Seq C1 exon
AGACCATCTGGTGCTGTGGCCATGGGCGGTGCTCTTGCGCGACCCAGTTGGCTGAGTTCTCCGACGCTGGGCAGAGCCAACCGGTTCCTGAGCACTGCCGCCGTCAGCCTGATGACCCCACGGAGACCCCTTGCCCCGCCAGAGAAGGTCAAAGTGCGGACCCTCGCCGTAGAGCAACGAACAGAGGAGGACA
Seq A exon
GTGAGTGCACCATTAAAATTAAGGAGTTTATTTGGGTTCTTATTAGTATTATATTTATTATCATTGCAATAGGGTATTTGAAGAAGGACTTTTAATTTTCAGTAACCCAGTTCAAGAGCTTTTGGTGAACTGAATTACTTTACAAAATTGCAGCTTTTAATGTCTGTTTTCTTTAAAAATCAATGATCTTCACTGTGTGATTGATAAAGGTTATAAAGTAGGTCTCAGACTTTACGAGAAGCACTGCTGTCCCACGCCATGTCTTTAAAATCTGAGCACTTACTTTACCCCAGTACTTTCAATGGAGTTTCTGTGCTCATCTGCTGCTACTGAAGGCGCTTGCGTGTAAACGGCTTTTCATCTTGTTTTACACTTGAACGAATAAATGAATGCTCAAGTCTATTTAACTGATTATAATTTAATCACATTACAACATTGATGCTGTAAAAAGGAACCGTATGAAACTGAACATAATCACATTAACCTTTCACCGGAAGTTTAGCGGTAGGGAATAAACACTAGCTGTGCTTATAACCTATTGTTTAATAGATAATAAAGAAACAAGGGAAGAGTTTAAGTAATATTCTGGTTAAAATATCACAATTGGATTAGATATTAGTTTATCACATGCATTAACAGAATATAAATACGTGTCGTGAATATCTTGAGTATCTAAATGTTTTTATATACTTACAGATGAAGTCAGAATTATTAGCCCCCCTTCAAATTTTTTTATTCTTTTTTTGCATTTTTTTTTTTTCAAATGATGTTTAATAGAGCAAGGAAATTTTCACAGTATGCCTGATCATATTTTTTCTTTTGGAGAAAGTCTTATATGTTTTATTTCGGCTAGAATAAAAGCTGTTTTTTATCTTTTAAACACCATTTTAGGGACAAAATTATGAGCCCCTTTAAGCTATATTTTTTCTCGATAACCTACAGAACAAACCACTGTTATACAATAACTTGCCTAATTACCCTAACCTGCCTAGTTAACCTAATTAACCTAGTTAAGCCTTTAAATGTCAAAATGTTAAGCTGTATAGAAGTGTCCTGAAAAATATCTAGTTAAATAGTATGTGCTGTCATTATGGTAAATAGAAAATAAATCAGTTATTAGAAATGAGTTAGTTAAATTATTCTGCTTAAAAATGTGGTCTCCGTTAAACAGAAATAAACAAAAATAAACGAAAATAAAAAAAGCGGTCTAACAATTCAGGGGGCTAATAGTTCTGACTTCAATTGTGTATTTGACCATAAACAATAAACATTTTAAAGCAAATGTATTATTTTAAAGGGCACAAATTGTAACCATTTTTAAAGATTTAATATGAATCCTGTGTCTCCAGAATGTGTCTGGAAAGTTTCAGCCATCAGATTATTTAGTATTGCTTTTTAAATCTGGGAAATGGTTGCTGTTTTAACAGTGTAACGTTATTGCCTTTGCCTTAAATGCTAATGAGCTGGTTTTCCCCGCCCACCGTTCCCCTGTGCTTGTCACAACCTTTATGTAGACAAACCAGTGTTGCCAACTTAGCAACTTTATCGCTATATTTGCTGACTTTTCAGAACCTGTCAGCGACGTATTTTCAAAAAAAAAAAAGACAAATCTAGCGACTTTTTGTGTGTTACTGAAGATTTTTATAGACTATCATTTGTCCATACTGTACCGTTCTGACTCTTCTCATTGAGCTGCGGGTGATGCCGTCAGCCCCTCCCACGCCTCAGAGCCCTGACAGGTGACCCAGTCCTCGTACAGCAGTCTCTCCCACCTGCAGCCTGAGAGCAAATCACCCCTCTGCACACCGACGGCAAATGATTTAGCACCGCAGTGTGAAGTTGTTTCCACTGTACAGTCAAACCAATCTGCTTCTCCATTATTTTAAATTTGTCTTTGTTCACAATCACAGATATTTTAGTGACAGTTTCAGAACTTGTCTGAGTTTATTACGTCAGAGAGATTACTGCAAATTATCTGCAAAAAAATATACTGTATTCAAACAGCACTATTTCCGTTTAATTGACATGCTTGCATAAAGCGTAGTGGAAGTATAAATACCCCATTTATTGATCATAGGCTGTTAAACAAACAGAAAGGGTAGAACCTGATGACCTCAGTAATATGCATATTGACGTATGATGTAATCTAGCGACATTTAGCTGCTTTTCGTGCAGAACTTATCGCCTTTTCATTGAAAATAGCTGGCAACAGTGAGACTAACAGCTCAGTGCTTAGTGACAGACAAGAATGAAGCAGATCTCCTTTATTACAGTAAGAACTTTCACAACAGTTATTTGATATTTTTCTTGTTGAGTTTATTTAGTTTAAATTTAATGTTAATGCATAAATAAACCTGATTTAACGTCCACAAACCGGCCTTGAAGCGTCTTCTTTCATAGTTGTGTTGACGCTATGCGGCTGTGGTGATGAATTACGTAGCGATTTTACTTCATTTTATTACAAACATGCATGGTTTGAGAAAGGTTTTAAACTTGTGAAACTCACTCTTGATCACATTTGATGATGACTGTTGTTCACAGAGAGCTATACAGATCTTTTATTTCTTTGCGCACATGCCGTCTTGTTGATATGATTATATGCGTTACTGCGGAGACATGTTAATTCGCAGCTGTCAATCAATATTGGTGGGTGGGAAAACCACACTCCTGCAGTACGTCTCATTGCGGACGACCTCAAAATGGGAGGGATTTGGCTCCTATTTTAACGTCAGGAAGTTTAAAAAAGAGATTTATTGAGTTTCTATCACCCCAATATGACTGTGGGCACACTATACCTACAGACAGCTCTGTCCAAAAAGCGCACAAAAGAGGATTTTCATCATAGGTGCGCTTTAAAAGGTCCCGTGAAGTGCTTTTAAATGCACTTTTTTTTTTTATTCGATGTCTGACGTAATCTCAGCCAAAACATGAAGAGAGGGTGGGACATAGCTTCTCTCCTTAAAAAAAGTTGAAAGTAGCGTTTCGTTTTATTGCCGCTCTGCCAGCGAGAGTGGCTGAGCTCAAGCACATCAAATGAGAAGCGTCTTGAAGGGAACGGAGCATGTCAGATATCAGAGATTATCTTAAAAAATAGCAATACTGATACTAACATCTAAAAAAACTTGATTTTAATTCAAAATAAAGTCCTTTAAAGTCCACTTTCTGCAGCTCTTGATCATCTTAGTCCTATGGTTTACTTGAACACCAGTTAGTTTGGCAATGAATTCCTCAAACAGAGTAAATCTCGCACCTTCCAGGAGGAAACATGCTGTTTTTTAACCCCTCTCTGTTTTCTTTTTTCTCCTGTAATTCTCTCTCACTGCATCATCTCCAG
Seq C2 exon
TCGAGGGAAGCCATGGAAACGATGGGCTGTTGCTGGGGCGACCGTTCGAGGAGCCCGACCAGCCAATCACAGAGAAGTCCCTGCTGGAGATCCTGGACGGGGTGGTGATGATTTACAATCTGAGCGTCCATCAGCAGCTCGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031269:ENSDART00000148147:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.427 A=NA C2=0.347
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]