RnoINT0127632 @ rn6
Intron Retention
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116840586-116841403:-
Coord C1 exon
chr8:116841205-116841403
Coord A exon
chr8:116840732-116841204
Coord C2 exon
chr8:116840586-116840731
Length
473 bp
Sequences
Splice sites
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
3' ss Seq
TTCAGTGTTCTGCTCCCCAGTTG
3' ss Score
7.02
Exon sequences
Seq C1 exon
CGTCCCGTGCAAGCACTGGCCATAGGAGGGGCCCTGCCCCTGCCCCGGCCTGGCTGGCTAAGTTCTCCAACCCTGGGCCGAGCCAACCGTTTCCTCAGCACAGCAGCCGTGAGCCTCATGACCCCACGGCGGCTTCTGAGCACCATGGAGAAAGTAAAAGTTCGCTCCCTGAATGTGGAACAGAGGACCCGTGAGGACA
Seq A exon
GTAGGTGCTGGGCAGAGCTGCTAAGGGACCTTGTGCTGTGTGCAACCCCTTATCTCTGGCAAGGCCCAAATACTCCCCTCCTCCCCCCATTCCCTACCACCTTGAGGTCTGGCCACATCCCAAGGGCAGAGGAAGCACAATCTGAAGATGTGAAATCAATACTACAAAAATAGGTCCTGGTGCTGCAGGACCTTGCCCTGCACCCACACTTTCTTGACCCATTCTCCCTGAAGCTCCCCTCCTGGGCAAGGAAGAGAGAGGGAATCCCTTCTCTGGAAGGCCCAGGAGCTTGTGACTACTTAAGAGAAAACTGGAGCTGGCTGTGGCACTGCCACCTTTAATGTAGACAAAAACAGAGGTAGTTAGGTCTCTGTGAGTTTAAGGTCAGCCTGGTCTACATAGTGAGACTCTGTCTCCAACACACTGAAACCCAGCACCGGAACCTGGCTCTCATTCAGTGTTCTGCTCCCCAG
Seq C2 exon
TTGAGGGCAGCCACTGGAATGAGGGTCTGCTGTTGGGGAGGCCCCCTGAAGAGCCTGAGCGGCCGCTTACGGAAAACTCGCTGTTGGAAGTTCTGGATGGCACAGTCATGATGTACAGTCTGAGCGTTCACCAGCAGCTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378:ENSRNOT00000043825:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=NA C2=0.457
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCAAGCACTGGCCATAG
R:
CAGCTGCTGGTGAACGCTC
Band lengths:
334-807
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]