HsaINT0141258 @ hg19
Intron Retention
Gene
ENSG00000164068 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:21148]
Coordinates
chr3:49758233-49758538:+
Coord C1 exon
chr3:49758233-49758327
Coord A exon
chr3:49758328-49758452
Coord C2 exon
chr3:49758453-49758538
Length
125 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTTCACTCTCCTCCCTGCAGCCC
3' ss Score
10.92
Exon sequences
Seq C1 exon
ATGCGGATTATATCAGTGCCGATGAGCTGGCCCAAGTGGAACAGATGCTGGCGCACCTGACCTCTGCATCTGCCCAGGCAGCAGCTGCCTCCCTG
Seq A exon
GTGAGTGGGAACACGGTGCACAGGTCCATGCCACTTGAATATGTGTGCACTCCTACACAGGCACAACGGACATCCACATAGCCAGGCATCCAACTCCAGCCCACCCTTCACTCTCCTCCCTGCAG
Seq C2 exon
CCCACCAGTGAGGAGGACCTCTGCCCCATCTGCTATGCCCACCCCATCTCTGCTGTGTTCCAGCCCTGTGGCCACAAGTCCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164068-RNF123:NM_022064:37
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF042167=FdhE=FE(28.4=100)
A:
NA
C2:
PF042167=FdhE=FE(25.7=100),PF139201=zf-C3HC4_3=PU(51.0=86.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGGATTATATCAGTGCCGA
R:
TTGCAGGACTTGTGGCCAC
Band lengths:
180-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)