BtaINT0125544 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011588 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr22:51055336-51055625:-
Coord C1 exon
chr22:51055531-51055625
Coord A exon
chr22:51055422-51055530
Coord C2 exon
chr22:51055336-51055421
Length
109 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTGCACTCTGCTCCCTGCAGCCC
3' ss Score
8.19
Exon sequences
Seq C1 exon
ATACAGATTACATCAATGTGGAGGAGCTGGCCCAGGTGGAACAGATGTTGGCACACCTAACCTCTGCATCTGCGCAGGCGGCAGCTGCCTCCCTG
Seq A exon
GTGAGTGGGGCCACAGCAGCTCAGTGCATGTCAGCACAACCGTGTGTGTAGTGCACACCCACTTGTCTGGGTGTCTGACCCAGCCCACCCTGCACTCTGCTCCCTGCAG
Seq C2 exon
CCCACCAGTGAGGAAGACCTCTGCCCCATCTGCTACGCTCACCCCATCTCTGCTGTGTTCCAGCCCTGTGGCCACAAGTCCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011588:ENSBTAT00000045376:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF042167=FdhE=FE(36.0=100)
A:
NA
C2:
PF042167=FdhE=FE(32.6=100),PF139201=zf-C3HC4_3=PU(51.0=86.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATTACATCAATGTGGAGGAGC
R:
TTGCAGGACTTGTGGCCAC
Band lengths:
179-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]