RnoINT0127647 @ rn6
Intron Retention
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116829434-116829706:-
Coord C1 exon
chr8:116829612-116829706
Coord A exon
chr8:116829520-116829611
Coord C2 exon
chr8:116829434-116829519
Length
92 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCCAACTCTTCACCCTGTAGCCC
3' ss Score
7.12
Exon sequences
Seq C1 exon
ATGCAGATTACATCAGTGCTGAGGAGCTGGCCCAGGTGGAACGGATGCTGGCTCACCTGACCGCGGCATCGGCCCAGGCAGCAGCTGCCTCCCTG
Seq A exon
GTGAGTGGGCATAAGAGGGGTACATGTCATGTTAATAATCTGTAAACACCAGGACAGGTGTGAGCAACCGGCCCCAACTCTTCACCCTGTAG
Seq C2 exon
CCCACCAATGAGGAGGACCTCTGCCCAATCTGCTATGCCCACCCCATCTCTGCTGTGTTCCAGCCTTGTGGTCACAAATCCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378:ENSRNOT00000043825:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF042167=FdhE=FE(28.4=100)
A:
NA
C2:
PF042167=FdhE=FE(25.7=100),PF139201=zf-C3HC4_3=PU(51.0=86.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGATTACATCAGTGCTGAGG
R:
GTGACCACAAGGCTGGAACAC
Band lengths:
169-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]