HsaINT0146183 @ hg38
Intron Retention
Gene
ENSG00000159307 | SCUBE1
Description
signal peptide, CUB domain and EGF like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr22:43197283-43207613:-
Coord C1 exon
chr22:43207534-43207613
Coord A exon
chr22:43204150-43207533
Coord C2 exon
chr22:43197283-43204149
Length
3384 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
CCACCCACTCTATCTTACAGGAC
3' ss Score
9.83
Exon sequences
Seq C1 exon
AGGACTACCAGCAACTCATAGAGGACATCGTGCGCGATGGGCGCCTGTACGCCTCGGAGAACCACCAGGAAATTTTGAAA
Seq A exon
GTGAGTGAGTTTATTGGAAGGGAATCCACGTAACCCTGGGATGGGGCCTGTGATGAGCCAGGACCGCCCCTGCCCCAGCCCTGGCCCCTGGAGGAGCAAGGGAGGGTGGGTGGTGATGGGAGAGGAGCAGGAGGCTTGGGGGTCCCAGAGCCCTAATGGTGGGGACTGGGTCCTGCACATCTGTTCCTCCAGACCAGGAGGCCTGAGGGAAGCTGTTTGGTGAGGACTTGGGGACCAGGACCTGGTGATGTGGCCTCAGGCACATTCCTCACCAGCTCACAGCCTCACTCTCCTCATCTGTAGAATGAGGGTATTCTGGGGGATGTCTCAGAATCAGTGGGATCTACCCAGTGCCATTGTCACTTGGAGCCCCCCTGCCGCTGGGACTAGGCTCCCTCCTCTTCCTGCTTCCAGCCTGGAGAGGCAGGGCCGCCTGGTGTGTCACATGGTGGGTACTGGCCAGAGGCCTGGGGACCCAGGACTCACCCAGCTCAGCCCTGGGCAGCAGCACTGTCAGCCCAGGAGCCCCGGGGTGTGGAGGACAAGGGCAGGGCTGGAACGCTCCCGCTGTCACTTCTTCTGAGAAAAGGATGGTTTGCAGAGTTCGGGAAGATTCACTTGAGTCTCCCCATAGTCTGCCAGTCACGTGCTGCCGCCCTCGGCTCCTGATTTCCTCCTCAAGCTGCTTAGGCAGAAACCAGGGATGCGTCCTGGGCTCTCTCCCCGCAATCTCTGTCCCCCCAGCTCCGCCCTGGGAGCATCGCTCCCAAACTGGAAGCATCCTGACACTGCTCTGGGGACACAAACCTCAGCCGGAGGGCCATCCTCCTCCACAGCAGCTCCCAGCTCCTCACACGCACCAGAGCCTCTCGGCCCCTTCTTTCCCCCACCTCTTTCCCCCCATCCTTCCGCCCTCAGCTGGGACATCCTGTCGTACTCTGGGCGGCCTGCCCGGACCCCCTGACCTGGGCACACCCTTTGCAGCCCCTTAGGTCCCGCGTGCCCCTCCTTCCTGGCGCCCACCAGCACTCACTTTAGGTTTGTTCTGTGAATATTTAGTCCCTGCCCCCACAGCACAGAGGAGGGCAGGAGCATCTGTCTCCAGGGTGTGGGTTCAGGGCACGCGTGTGTGTGTGCGGGGGGTGGGGGAGTGTGCTGTGTGGTGTGTTTGTGGAGGCATGTGTGGTGAGTTTGGAGGTGTTCAGTGTGTGTGGTGACTGTGGTGTGTGTGTAGGGGTGTGTGTTGAGTGGGTGTGTATAGTGTGTATGTAGGGGTATGTAGGGGTGTGTGTGCTGGGTGTGTAGGGGTGTGTGTTGAGTGGGTGTGTGTGGGGTGTAGTGAGTGGGGGTGTGGTGGGTGTGTGGTGTGTTTGGGGGGGTGTGTGGTGAATGGAGGCGGTGTGTGTAGTGGGTGGGGGTGTGGTGGATGTGTGGTGTGTATGGGGGTGTGTATGGTCGATGGAGGTGAGGGTGTGTGGTGTGTGTGGGGGTGAGTGTGTGGTGAGTGGGTGTGTGGTATGTATATAGGGTGTGTGATGAGTGGGGGTGGAGGTGTGAATAGAGGTGGGGTGAGTGTGGTGAGTGGGTGTGTGGTGTGTATATAGGGGTGTGTGTGGTGAGTGGGGGTGGGGGTGTTTGTGGTGAGGGGTGTGTGGTGGGTGTGGTGTGTGTGGGGGTGAGTGGTGAGTGGGTGTGTGGTGTGTGTGGGGGTGAGTGGTGAGTGGGTGTGTGGTGTGTGTGGGGGTGAGTGTGTGGTGAGTGGGTGGTGTGTGTGTGGGTGAGTGGTGAGTGGGCGTGTGGTGTGTGTGGGGGTGAGTGTGTGGTGAGTGGGTGGTGTGTGTGGGGGTGAGTGAGTGGTGAGTGGGTGTGTGGTGTGTGTGGGGGTGAGTGTGTGGTGAGTGGGTGTATGGTATGGGGTGTGGTGGGTGTGTGGTGAGTGGGTGTGTGGTGTGGGGTGTGGTGGGTGTGTACACAGAGATGAGTGTGTGCCAGGACAGGTCCACCCCAGACACAGCAGATGCAGTCACAGTCAACAGGGCGAGGAGCTCTCACGCGCCAGCAGGTGGTGGTCGCCATTTGCTGAACACCTTCCCTGGGCCAGGCTCTGGGGACTCTGTCAGGAACCAGACCTCCGCCAGGCCTCACCTCTGCTCCATAGTTTCTGCCCAGGGTGGCAGCCAGTGCCCCACTAGAGAGACGAGACACTGGGGCTCAGAGAGGGCGGGGACTGCATCTGCCCTCCAGAGACTGCTCCGGAGGACAGCCCCGTTTGCTGCCTAGATCCCTGCAGCAAACCTGTACTGAGCACCGCTGAGGAGAGGTTCTCTGCTCACGCCAGTGCAGATCATTTTCCTCGCAGCCCCGGGAAGAGGCATCGTGACCTCTCTGTGCAGGGAAGAATGAAAGTCAGAGCAGCAAAGCGATGTTCCCGAGGTCCAGGGACCAGCGAGCAGGCCTGAAGTGATGATTTGGGATCTGCCAGCTGCAAAGCCTGTGCTCTTGGCTGGGTGTTCTCTGTTTGCAGATGTTGGTTGTGTTGTGTCATTTTGCAGCGGGACCCTTTGTTAATAAAATCTTTTTTTTTTTTTTTTTGAGACAGTCTCGCTCTGTCATCCAGCATGGAGTGCAGTGGCACACTCTCGGCTCACTGCAACCTCCGCCTCCCGGTTTCAAGCAGTTCTCATGCCTCAGCCTCCCGAGTTGCTGGGATTACAGGCATGCGCCACCACGCCCAGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCCCCATGTTGATCAGCCTGGTCTCAAACTCTTGACCTCAGGTGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACACTTGGCCTTTAATAAAATCTTATTGGAATCCCAAGAGTTAATGCCAATGATCTATTTAAAAACCAGTTACGGGCCAGGCGCCGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGGTCAGGAGCCTGAGACCAAGCTGGCCAACATGGTGAAAATGCGTCTCTACTGAAAAGACAAAACTTAGCCAGGTGTGGTGGTGCATGCCTATAATCCCAGCTACTCGAGAGGCTGAGGCAGCAGAATCACCTGAACTCAGGAGGCGAGGTGCAGTGACCCAAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGGGCAAGACTGTCTCAAAAAAAATAAACAAATAAAAACCAGTTATACTATTAAAACCAAAAGAAGGTCTGTGGGGTCCTGAAACCCACCAGCCAGCGCATCTCTCTCCCCTCCCCCAGCCTGGCAACACCCCACAGACCCTACAGGCCCCAAGCCTCCCCTGCCTCCCACCCACTCTATCTTACAG
Seq C2 exon
GACAAGAAGCTGATCAAGGCCCTCTTCGACGTGCTGGCGCATCCCCAGAACTACTTCAAGTACACAGCCCAGGAATCCAAGGAGATGTTCCCACGGTCCTTCATCAAACTGCTGCGCTCCAAAGTGTCTCGGTTCCTGCGGCCCTACAAATAACCGGGGGGAGCGGCCCTGCCTGGGGGTGGCCTGGTCCGCGGAGGGTGCACCTGCCCTCCACAGTGGGAGCTGCATGGGCCTCCACACCACCTTGGGAACCCCATGGCACTGCCCTTCAGGGAAGCCGACCAGCCCATGGAGACCGAGCCCAGGCACCCTTCGGACCCGCTGCCCCTGTGGGAGCACCCTGCTTCAGGAAGCCTCCCTCCCTCCCTCTGCCTCCCTTCCCCAGGACACCAAGAGCGCCCTCTCCTGAGCCCTGGCAGACCGACTGCAGGTAGCAGGATTGCAGGACCCTCTGCCTGGCCTGGCGTTTCAGGAGAGAGGGGAAGTGGGGCCTGTGCTCTGGGAGGCGTGGTCATCCGAGACAGGAGTCCAGGGGAGAGAGGAGGGGACAAAGGCGCCGTCTGGGGGAGGTCGATGAGCCTGTGCTGGCATCCGCGGGCCCCACGCTTTGCCAACTCCTCCAGCCACAGGCAAGGCCACGGCTCCGGGCTGTTGCGCTCTAAGGGTTCTGTGATTGGATGGAACAGAGCTGCTGGGGAGGAGACTGGAAGTTTCTGCATTCCTTCAACAGAACATTTAATGAAGTACTCTATATATATATATAAATATATATATAAATATATATATATACTTCTATTTGTGGGTACTTTAGGAAAATGCCCTTTGGTCACTGTAAATATGAATTGTGACCCCATCCCTTCCCGCATGAGCCCAGTGAGTCCCAGCAGCTATCAGCCTCCCTGAACGATTAAACAGCTCCTCCCAGCATTTGCATTTGCCCTTCTGTTTCTGTGAGGCCGGCAGCCCTTGGGGCTGGGGAGAGCACAGCTTGCCTTGGACTTGCTTCTGAACACGAATTCTTCGAGAACTAGGCTCAGATGCTCTGCTGGAGTGTTGGCCTCACCCCAGTCCCCTTGCCAGCAACATCACTGCCCTTGGACGAGACTCAGTGGAAGACACTTCCCCTCGGACCCGTTCCCAGGAGGTGCAGGGGCCCAGCAATAAACGGCGAAAGGGGCCTTGGCTCTTGCCCTGTGGCAGTGACCTTGGGGTCCGTACTATGCCCAGGTGTCAGCAGGAAACAAGGCCTTGCTCACAGGAGCACAGGCTGTACCACCACAAGGAGCCTCAGAGCGGCCAGTGAGGAAAGGGGAGAGAGCAGAGCTTGCTGTCAGAGGCCAGGCTCCCAGTGCAGCCTCCTCTTGCTACGCCATGCCACCCCCATTCACAGGGAAACCTCTTTCCTTCCTATAAAGGAAAGAGGTTGAATTGACTCACATTTCCACATGGCTTGGGAGGCCTCAGGAAACTTACAATCATGGCGGAGGGTGAAGGGGAAGCAAGCGCCTTCTTCACAAGGCAGCAGGAGAGAGAAGCAAGCAGGGAAATGTCGGGAGAAAGAGAGTCTGGGCTGTGACCGAGTGCATGTGTCCCACCCAGCCGGAAGGCCAGCGCCTGGGATGGAGCCAGCAGAACCCCATGCCGAGGTCCAGGAGGCCTTGCCTGCTCTTCATCTGCCTGCGAGCTGTAGGACCTGCATGGGAAATGGTCTGTGTGTTTCAGGTTAACAAATACTGAAAATCCCAAGGAACCTGGGAGAATCTGAAAATGAACTCCAGTCTTCAGCTCGAAGTTGCCTCTAGGGTTCCTCCTGGTCACCCCCGGGCCCAGCCTGGCTGGCGAGAAACAAACACGGTTTGAGAGGCTGTGGCACACTGAGGACCACACAGATGGAGGCAGCCAAGTGAGGTCCCTGGAGGTTCAGGGCTTGGTGACGAGGTAGGCCGTGATCACATATTCTACAGTCCAAAAGAGGGCCCGGAGCTCAGCAATTACTCACGCCGTCACATGTGCCCACAGTAGCGGGCTCCGCGGCGTGGCTCCTGCTGCCATCAGCTGCCTTCTCTGCTGAAGTCCAACTCAAGTCGGAGAGAGAGTGGAGCCTCTGCACTTGGGGAGTAGGTCAGTGTCAACTAACAAGCCCTGCCAGGGGCCACTGCCGCTCCTCTGGTCACAGTCCACGCAGGCCAGCCCTGGTTTCTGGAAAGAGGCCTCCCTCCCTCCCTTTGTGGAGCCGTCAGTCATCCCCAAGATGAGAGGCGAGCATCCTGCCGAGTGAGCCTGCAGCAACAGCTCCTGAGGAAGGTGCCGGGAGGGGTGTCGCCTCTTCACGAGTGTTCTCCAGAGAATCAGAACCCAGAGGATACAGACGTAGATGTGTGAGGGGCTGCATTATGGGAACTGGCTCACAGATTCTGGAGGCCAACAAGTCCCACGATCGGCTGTCTGCGATTGGGAGACCAGGAGAAGCCACACCGTAACTCAGTCTGAGTCCAAAGCCCGAGAAGCCAGGGGCCACCCTGTGAGTCCCAGCATCCAAAGCCCCGAGAACGAGGAAGATGGATGTCCCAGCTCCCAAAGGGAGGATTCTCCCTTCCTCCTCCTTCTTTTCTATTGGGGCCCTCAACAGATTGGATGGAGTGGATGTCTTCACTCAGTCTGCCAATTCCCATCCTAACCTCTTCTGGAAACACCCTAGCATGTTTTCCCAGCTAGCTGGGTATCCGTTCACCCAACCAAGACGACCATGCAATCAACCATCACACTTAAATGTTTTTGTTTTGTTTTTTTTGTTTTGTTTTTTGTTTTCTTTTTTTGTTTTCTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTTGGTTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCACCACCTTGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATATTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCAGCCAGGGTTTTCTTTTTTAATCCTTTCCAGAAACAGAAAGAGCTCTTAACCTCTCTGAGCTCTTTCTGCAATTCCTTTGGGCGATTTCTGAAAGTTGCCACCCACGTACTCACAGATCCACTGCCCGCCTCTCCTCCCCTCATGTTCCAGGACTCACCACCGTGGTCAGACCATGCCCAGTGTGCCCAGGGCAAAGTTGGATGGGCAGGTGCAGACGAGGCCCAGCCTTCATCCTGCTTTCCCTCGCAAGCCCTTCTATAGCTCCCAGCCCACGGGAGAGGCCATGAGGAGCGCGAGGTCGCCAGCAGCCCCACTGGGCCTCCCACACCATCTGAGTGACTTGAATTCCAGGGTTGGGCTCTGTCTTGAGTCTCCACATCAGTCTCACACCAGGGAACTTGGGGGTCCCCCGTTAAACTACAGCTGACCCTGGGCCTCAGGGCGGGATGGTCCCAAGGTGAGCTCCGTGGACAGCAAAGCGCATTTCTTCCAGTTGGCATGTTGTCGAAGCCAATGGCAGCTTGACTGATGTGAGGTGGCTATTCCACCTGGTTCAAGATGGAGGTGTAGAGAAAAGGGAAGTGGGGAACAAGGACTGGGCCAGGTAGGACGGATCCACGTAACGAGGCCCAAGAAAAAATGGAAGCTGGGGGCAGAGAGTCCAGGAGGCCCCCATGCTGTCTGAGGGGAGGCCGGCATAGCCCCTCCTCGACTGTCGCCTGAGCAGCTGATGAGGTCCCCAGCGCCGCACGCTGTGCTCCAGGGAGAGGAGCCAAGAAGCAAGCGGGCTGCTGGGAGTCCCTGCACTGCCATCTGGCCGGGACGGAGGCGCCTGCCCGGTCTCCAGGCTCCTCTGAGCTTGGGTCAGCTCCTAATGGAGCATGGCACCCCAGGGAACCAGAGGAACTCTGTGAAGAAAGGCATGGAAAACCGGGGTGTCTCCCGCACAGCTTCCCAGGAGTCAGGTGGGACCCAGGCGTGGGGGGACCTTTCTGCCCCACATTCCTGGCATTCCCCCCAAGTTTATTTCTACTTTCCAGAAACAAGCCACGGGAAGGGAAGGAACCTGCAGCAGGGTTTCGAAGACAGCCAGGCCCTCCGTGATTGAGGGCTCATATAGCCGCTGAGGGCAGCCTGCAGCCAGGTGGCCTCACCTGCTGCCCAGAATTAGGCTGTGCCTTTTCCCAGTCCTTCCCCATGCCAGAGCCTCTCCCCATCTTTCCCCGCGCCAGAGCCTCACAGCCACAGCCACACCAACCTCCCTCCTCTCAAGCAGCAGAATCAGCCTACGCTCCCCAGCCTCAGTGCCCCTGCCCCACACAGGTCACGCTGGCAAGGCGATGACCAGTTTCCGAAACGCTGGATCCCCAAGGGTACAGTGTGGCCCAGTCCTCCCCCACCTCCATGGTGGCCCAGGCTGCAGGGCTCACGGTGGGCCCACGGTGGAGGCCTCAGGCAGCTTTCTCTCCAGCTACCCATTGGCTTAGGACACACAGATAAAGTAGAGCTGAAACACGGGCCAAAACATCCCCAGACAAGGATGGCACAAGAGGCCAAATTTGAAGGCCTTGGGAGAGAAGCCATTTCCCCTACCTCTAACGAGCGTAGTTTTCTGTCTGAATGGCCCCCCTTTTCATGCACGCTCGTTCTTAAGAGACGCACCATCCGCAGGCAGCGTCTCAGTGAAGCCTGTCCCCTGGGCTTGTCCACGGCAGGAGGCCCCTGGCCTGTTTAAGCCATACCGATGCTTAATTTACATTTTTGGAGTTGAATATTATTCCGGTGCCTCCACCACCCCCAGCAGAAAAAATAAGATACTGAAATAAGTTGAGTCATTTCGCAAACATTTACTGAGCACCTCCTGTGTGCCAGGCTCCTAGAAAGACAGGGAGTTGGTGCCCTGCACAGATGACAAACTGCCCCAGACAGCAGACAGACAAACAAACTGCCCCGGACAGCAGACAGACAAACAGACACATTGCCCTGGACAGCAGAGAGACAAACAGACACACTGCCCCGGACAGCAGACAGACAGACACGTTGCCCCGGACAGCAGACAGAAAAACTGCCCCGGACAGCAGACAGACAGACAAACTGCCCCAGACAGCAGACAGACAAACTGCCCCGGAAAGCAGACAGCAAACTGCCCCAGACAGCAGACAGACAGACACACTTCCCCAGACAGCAGATAGACAGACACCCTGCCCCAGACAGCAGACAAGCTGCCCTGGACAGCCTGCTCACCTTGCCTGCCACAGTGCATGCCCCACAGGGAGAAGCCTTCCTTCTCACCCAGGGAGTCCAGCCATTTTCACCTCCCCTGGTCCATGCTCAGGAAGTCTGGTCACCCTGGCAAACTGCACCTGACATTGAGGTCCCTTTTCACCAAAGATGCACAAGGTGTCCATGCCGAGCCGACATCATTCAGGCCAAGGGCAGAGGATGTAATGAGGGGTGGAGTGAGGATGTGGAGAGAGAGCAGAGAGCGCCTCCTATTCTACCGCGGCTGCCTCTGCCCCCACAGCACCCACAGATCCCTGGCCCTTCCAGGAGTAAGTCCTGGGCAGGCAGAGCTGGGGTTGGCCTGATCCCACCTGCCTTGCTCTTGGAAAGGACATCAGGTGTGGGCAAAGCATCCTTGAAGCCCAGACAACACAGGCATGGCCTGCGTGCCCTCCCAGCATCTGCTGCGATGGCCTCAAGGCCTCTCCAGTCCCCTGCTGCACCATGCCACTCAGAGCCCCTGAGTGAGCCCCCTGGAATTGTCTGCACCCCCCAAGCCCCAACAGGAAGAAGGGAAAGGTGGGGAAGCTGACGCTCACTCAGTGCCCACTGGGTGCCAGGCTCTGGGCTCAACCCTCTAATATCCACACATTCCATCCCCCCAGCCCCATGTAGATGGTGGGGTTAAGACCATTCTTCAGATGTGGAAATGAAGGCTCTGGGAGACCACAGGACATGCCCAAGGCAAAGAGTTGGTAGTCCCTGGATTTGGGAATCAAACTCAAGCCCATCTAATCCAAGGGTAGGAAATGTCTCTAAAACGTTGATCAATCTGAAGCTTACAGATTGGAAACTGGGCCAGGTCAGCCCTGGCGGTGGAGTCCAGAGACAGAGAGAAGGCTGCAGGGAGGGGAGAGAACAGGAGGATCCCGGGCCAGGGTGACTTCAGTGACATTCCTTCCCTCCTTCACAAGCACGAAAAACTCGTTCGGAGAAAAGACAGCTTCTGCCTTCCCTACCAGGCGGACAGGGTACTCACTGTGCCGACGTGAGCAGACACAGCCAGAGGCTCAAGTGCCCTTGCCGAGTGTCCCCACTGCTCTTGGGGAGGCCCCGGCACAGCCCTGCAGAGATGCAAGTAAGAGAGTGCCCAGTGCCCTCGGCAGATGGGTGGCAGAAAGCAGGAGGAGGAAGAGGGAGCTGACCGATGCCGGGTGTCTTACTCCGCTGAGATCAGAACCTCCAACATGCCGAGCAGACGCAGGCCACATTGCTCGGGGAACAGGACACCAGGGCGCTGTGCTAGCGGCCCGCAGACTTCACTTCTGGCTCCTGTGAGGGCACTGTATTGTCCAGACGCTTGGCAACGACTCTGCCTGCAAGTGGCAAATACCAACATAACCACATCTTCCTTTTAGTTGCCACAAATATTCAGTTTTGTTTTATCCATCATGTCCCCCATATGCATGTAATGAAACATTTGTGAAAATCACTTTAATAATAAACAGGAAATGAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159307:ENST00000360835:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development