GgaINT0141281 @ galGal4
Intron Retention
Gene
ENSGALG00000002675 | SCUBE3
Description
signal peptide, CUB domain, EGF-like 3 [Source:HGNC Symbol;Acc:HGNC:13655]
Coordinates
chr26:4079185-4079570:-
Coord C1 exon
chr26:4079491-4079570
Coord A exon
chr26:4079335-4079490
Coord C2 exon
chr26:4079185-4079334
Length
156 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCAGCTTTGCTTCCTCCCAGGAC
3' ss Score
8.61
Exon sequences
Seq C1 exon
AGGACTACGAGCAGCTGGTGGAGGACATCGTGCGGGACGGCAGGCTGTACGCCTCCGAAAACCACCAGGAGATCCTCAAG
Seq A exon
GTGAGCGCTGCTCCCCATCACCTCCGCTGCCTGGCACTGCTGGGGTGCGCACGGTGCATCGCCCGGGTTTGGAGCTGTGCTGGGGGTGCTGTGGGGCTGAAGCAGCTGCACGCTGCGCCCGGGATTGGGGCTGACATCAGCTTTGCTTCCTCCCAG
Seq C2 exon
GACAAGAAGCTGATCAAAGCGTTCTTCGACGTGCTGGCACACCCCCAGAACTACTTCAAGTACACGGAGAAGCACAAGGAGATGCTGCCCCGCTCCTTCATCAAGCTGCTCCGCTCCAAAGTCTCCAGCTTCCTGCGGCCCTACAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002675:ENSGALT00000004215:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTACGAGCAGCTGGTGGAG
R:
GGAAGCTGGAGACTTTGGAGC
Band lengths:
211-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]